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Improving 
Integrity, 
Transparency, 
and 
Reproducibility 
Through 
Connec:on 
of 
the 
Scholarly 
Workflow 
Andrew 
Sallans 
Partnerships 
Lead 
Center 
for 
Open 
Science
A 
talk 
on 
the 
Open 
Science 
Framework 
1. Free, 
open 
source 
plaHorm 
2. Designed 
to 
add 
efficiency 
to 
workflow 
3. Connector 
to 
other 
tools 
and 
services
So, 
why 
is 
this 
important?
Challenges: Perceived norms 
Norms 
Communality 
Open Sharing 
Universalism 
Evaluate research on own merit 
Disinterestedness 
Motivated by knowledge and discovery 
Organized skepticism 
Consider all new evidence, even against 
one’s prior work 
Quality 
Counternorms 
Secrecy 
Closed 
Particularlism 
Evaluate research by reputation 
Self-interestedness 
Treat science as a competition 
Organized dogmatism 
Invest career promoting one’s own 
theories, findings 
Quantity
Anderson, Martinson & DeVries, 2007
A 
liNle 
something 
about 
COS 
• Est. 
2013 
• Non-­‐profit 
tech 
startup 
• 4 
leading 
founda:on 
funders, 
> 
$14M 
• Located 
in 
CharloNesville, 
VA 
• Team: 
~ 
25 
FT 
& 
20 
interns 
• Mostly 
so]ware 
developers 
and 
researchers 
Mission: Improve openness, integrity, and 
reproducibility of research
Create an account 
easy and free! 
http://osf.io
Modify Account Settings 
https://osf.io/settings 
Update 
information
Dashboard 
Project Organizer
Project Overview Page 
Overview
Using the Wiki 
In the 
menu 
bar 
Wiki 
history 
Add new 
or edit
Adding Components 
Add a new component
Adding Contributors 
Select from 
the results 
Choose 
permissions
Privacy
Uploading Files 
Click upload button 
or just drag and 
drop
Versioning 
See version history 
and download
Registering Your Work 
Choose the 
registration 
template 
Create a frozen 
registered version
Sharing Your Work 
Create a 
view-only link 
Describe the 
link use 
Option to 
make 
anonymous 
Select what parts of the 
project to share
Unique and permanent IDs 
Scientific content must be easy to cite and 
annotate 
Approach: GUIDs for all content 
https://osf.io/e81xl -> RPCB 
https://osf.io/alh38 -> Tim Errington 
https://osf.io/ibdv8 -> Coding_Study_1.xslx
Current Add Ons: 
• Dropbox 
• Github 
• Dataverse 
• Figshare 
• AmazonS3
Connecting the workflow
Examples 
of 
other 
connec:ons 
Taking 
a 
data 
management 
plan 
and 
conver:ng 
it 
into 
a 
living 
document. 
Providing 
a 
data 
repository 
lookup 
service 
and 
checklist 
to 
assist 
with 
prepara:on 
for 
deposit. 
Connec:ng 
to 
a 
sensi:ve 
video 
storage 
service.
Tools 
used: 
OPEN SCIENCE FRAMEWORK 
osf.io | @OSFramework | #OSFinAction 
OSF in the lab 
Erica Baranski 
Qualtrics, 
Dropbox, 
Survey 
Monkey, 
R 
Q 
What tools do you use in your research? 
A 
OSF 
features 
used: 
version 
control, 
collabora:on, 
wiki 
for 
lab 
notebook 
and 
mee:ngs 
Q 
How do you use the OSF?
Tools 
used: 
next-­‐gen 
sequencers, 
pipeline 
so]ware, 
custom 
so]ware 
OSF 
features 
used: 
version 
control, 
file 
sharing, 
GitHub 
and 
Dropbox 
integra:on, 
public 
sharing.
Problem 
to 
solve: 
teaching 
undergrads 
how 
to 
make 
research 
reproducible 
and 
verifiable. 
OSF 
features 
used: 
organiza:on 
of 
documents 
and 
data, 
command 
files, 
metadata, 
and 
file 
sharing.
What’s 
underneath 
the 
hood? 
• Python 
• Javascript 
• Git 
• MongoDB 
/ 
TokuMx 
• Ansible 
• Elas:csearch 
• OSF 
API 
• Rackspace 
• Linode
Want 
to 
join 
the 
effort? 
• Contribute 
content 
to 
SHARE 
or 
partner 
on 
cura:on 
of 
content 
• Serve 
as 
an 
Ambassador 
• Coordinate 
a 
reproducible 
sta:s:cs 
and 
prac:ces 
workshop 
• Join 
the 
team 
– 
hNp://cos.io/jobs
Open Science Framework osf.io 
Email: contact@osf.io 
Twitter: @OSFramework

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Improving Integrity, Transparency, and Reproducibility Through Connection of the Scholarly Workflow

  • 1. Improving Integrity, Transparency, and Reproducibility Through Connec:on of the Scholarly Workflow Andrew Sallans Partnerships Lead Center for Open Science
  • 2. A talk on the Open Science Framework 1. Free, open source plaHorm 2. Designed to add efficiency to workflow 3. Connector to other tools and services
  • 3. So, why is this important?
  • 4. Challenges: Perceived norms Norms Communality Open Sharing Universalism Evaluate research on own merit Disinterestedness Motivated by knowledge and discovery Organized skepticism Consider all new evidence, even against one’s prior work Quality Counternorms Secrecy Closed Particularlism Evaluate research by reputation Self-interestedness Treat science as a competition Organized dogmatism Invest career promoting one’s own theories, findings Quantity
  • 5. Anderson, Martinson & DeVries, 2007
  • 6. A liNle something about COS • Est. 2013 • Non-­‐profit tech startup • 4 leading founda:on funders, > $14M • Located in CharloNesville, VA • Team: ~ 25 FT & 20 interns • Mostly so]ware developers and researchers Mission: Improve openness, integrity, and reproducibility of research
  • 7. Create an account easy and free! http://osf.io
  • 8. Modify Account Settings https://osf.io/settings Update information
  • 11. Using the Wiki In the menu bar Wiki history Add new or edit
  • 12. Adding Components Add a new component
  • 13. Adding Contributors Select from the results Choose permissions
  • 15. Uploading Files Click upload button or just drag and drop
  • 16. Versioning See version history and download
  • 17. Registering Your Work Choose the registration template Create a frozen registered version
  • 18. Sharing Your Work Create a view-only link Describe the link use Option to make anonymous Select what parts of the project to share
  • 19. Unique and permanent IDs Scientific content must be easy to cite and annotate Approach: GUIDs for all content https://osf.io/e81xl -> RPCB https://osf.io/alh38 -> Tim Errington https://osf.io/ibdv8 -> Coding_Study_1.xslx
  • 20. Current Add Ons: • Dropbox • Github • Dataverse • Figshare • AmazonS3
  • 22. Examples of other connec:ons Taking a data management plan and conver:ng it into a living document. Providing a data repository lookup service and checklist to assist with prepara:on for deposit. Connec:ng to a sensi:ve video storage service.
  • 23. Tools used: OPEN SCIENCE FRAMEWORK osf.io | @OSFramework | #OSFinAction OSF in the lab Erica Baranski Qualtrics, Dropbox, Survey Monkey, R Q What tools do you use in your research? A OSF features used: version control, collabora:on, wiki for lab notebook and mee:ngs Q How do you use the OSF?
  • 24. Tools used: next-­‐gen sequencers, pipeline so]ware, custom so]ware OSF features used: version control, file sharing, GitHub and Dropbox integra:on, public sharing.
  • 25. Problem to solve: teaching undergrads how to make research reproducible and verifiable. OSF features used: organiza:on of documents and data, command files, metadata, and file sharing.
  • 26. What’s underneath the hood? • Python • Javascript • Git • MongoDB / TokuMx • Ansible • Elas:csearch • OSF API • Rackspace • Linode
  • 27. Want to join the effort? • Contribute content to SHARE or partner on cura:on of content • Serve as an Ambassador • Coordinate a reproducible sta:s:cs and prac:ces workshop • Join the team – hNp://cos.io/jobs
  • 28. Open Science Framework osf.io Email: contact@osf.io Twitter: @OSFramework