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Microbiology
Dr. Ahmed Omara
Bacteria
Bacterial characteristics
Bacteria are a group of unicellular prokaryotes* that contain: DNA & RNA.*
NO nuclear membrane = DNA lies free in the cytoplasm*
NO organelles in cytoplasm*
Bacteria reproduce by binary fission.*
Basic structure of bacteria
Basic structure of bacteria*
• Cell wall: in majority of bacteria. All walls contain a mucocomplex of muramic
acid and are porous to all but except very large molecules.(10-20% of dry weight)*
• Cell membrane: important osmotic barrier and the site of a number of
important enzymes.
• Plasmids: are fragments of DNA* that are found within bacteria and are
thought to be involved in antibiotic resistance.
• Flagella: for motility.
• Pili: for conjugation (transfer of DNA from one bacterium to another)
• Mesosomes: are cytoplasmic sacs with intense enzymic activity associated
with division septa.
Diameter ~ 1 μm
Classifications of bacteria
1. According to morphology:
 Cocci (round)
 Bacilli (cylindrical)
o Fusi-form (tapered at both ends)
o Filamentous (long threads)
 Spirochetes
o Vibrios (spiral) bacilli
Classifications of bacteria ????
2. According to metabolism and growth:
- Autotrophs: able to utilize simple inorganic compounds
- Heterotrophs: can NOT synthesize all their organic requirements.
Oxidation in the form of respiration and fermentation provide energy.
- Strict aerobic bacteria : obtain energy by: respiration 
- Strict anaerobes: obtain energy only by fermentation
All bacteria need CO2 to initiate growth.
Facultative anaerobes: aerobic bacteria that obtain energy by respiration  + fermentation
Classifications of bacteria ????
3. According to staining:
- Gram staining
- Ziehl-Neelsen staining
- Others:
• PAS stain and Gomori’s methenamine silver stain: selective for fungal elements,
such as hyphae.
• Acridine orange can detect fungi and bacteria such as Nocardia.
• Immunofluorescent methods detect chlamydia and the protozoan Acanthamoeba
Gram staining
Steps:
1. Staining with crystal violet (blue–black)
2. Staining with iodine
3. Decolourizing with acetone
4. Counterstaining with diluted carbol-fuchsin (red).
Ziehl–Neelsen staining
Steps:
1. Staining with carbol-fuchsin
2. Gentle heating
3. Decolourization with acid and/or alcohol
4. Counterstaining with malachite green (modified Ziehl– Neelsen) or
methylene blue (full Ziehl–Neelsen).
Culture media for bacteria
1. Accoring to nutritional component:
• Simple Medium (Most common in routine tests) e.g. Nutrient Broth, Nutrient Agar
• Complex Medium as blood agar
• Synthetic Medium
Culture media for bacteria
2. Accoring to functional use or application :
• Enriched Media e.g. Blood Agar & Chocolate Agar(H. influenza)
• Selective Media: contain chemicals that inhibit the growth of some bacteria
only e.g.
- Thayer Martin medium: selective for Neisseria gonorrhoeae
- Desoxycholate-citrate agar: permits the growth of salmonellae but inhibits
Escherichia coli *
- Lowenstein Jensen medium: for mycobacteria tuberculosis
• Differential Media*: Mac Conkey’s Medium* distinguish between lactose
fermenters and non lactose fermenters bacteria*
MCQs
• Nutrient broth is a watery extract of meat, containing partly digested protein,
carbohydrate, and electrolytes. It is sterilised by heat and has a pH of 7.3.
• Blood agar consists of nutrient agar with added defibrinated horse blood and is
a good medium for fastidious and delicate bacteria.
• Strict anaerobes require reducing agents (such as sodium thioglycoll ate,
minced cooked meat or metallic iron) to support their growth.
Microbiological investigation of bacterial keratitis
OrganismInvestigation
Identify Gram-positive or negative bacteriaGram stain
BacteriaBlood or chocolate agar
AnaerobesMeat broth
NocardiaModified Ziehl-Neelsen
MycobacteriumFull Ziehl-Neelsen
MycobacteriumLowenstein–Jensen
FungiAcridine orange PAS
Immunofluorescence
FungiSabouraud’s agar
AcanthamoebaNon-nutrient E. coli seeded agar
Bacterial virulence and pathogenicity
Virulence: Degree of pathogenicity of the individual organism
Pathogenicity is dependent on:
• Ability to withstand environmental stress & survive outside the host:
(for example spore formation, when conditions are favourable the spore
germinates)
• Ability to mutate
• Ability to infect and incapacitate the host.
Tissue invasion can occur due to a direct cytotoxic action or via release of toxins.
Endotoxin vs Exotoxin
Endotoxin vs Exotoxin
Exotoxins
Produced by Gram-positive bacteria.?
Extremely potent
Proteins 50 to 150,000 kDa
Producing effects at sites distant to the primary site of infection
Examples: Botulinum toxin from Clostridium botulinum.
Exotoxins are easily destroyed by heat.
Exotoxins are immunogenic so can also be modified and used in vaccinations.
Endotoxins
Endotoxins are normally released by dead or lysed Gram – ve bacteria.
They are lipopolysaccharides of 100– 900 kDa derived from the cell wall and are
required in large quantities to produce an effect.
They are heat stable.
Endotoxins activate:
- Platelet aggregation
- Hagman factor  activates clotting
- Alternative complement pathway
Endotoxins
The systemic and immunological effects of endotoxin
• Fever (d.t. release of IL-1)*
• Tolerance: repeated exposure to the same endotoxin  antibody production
and active removal of antibody/endotoxin complexes with cessation of a febrile
response
• Lethal shock: can occur after large doses of toxin
• Schwartzman phenomenon: intravascular coagulation due to endothelial cell
damage and platelet aggregation; tends to affect the lungs and kidneys
• Activation of alternative complement pathway
Enzymatic substances that enhance bacterial pathogenicity
Mechanism of actionEnzyme
Bacilli use this to disrupt collagen in connective tissueCollagenase
Helps deposition of fibrin and coagulates plasma
Fibrin coats the bacteria and therefore protects against complement
Coagulase
Hydrolyses hyaluronate in the extracellular matrix of connective tissue
and hence facilitates the spread of the organism
Hyaluronidase
Activates fibrinolysin and converts plasminogen to plasmin, which
dissolves fibrin clots and aids spread through tissues
Haemolytic streptococci produce this
Streptokinase
Group A haemolytic streptococci produce enzymes that lyse RBCs and
tissue cells, e.g. streptolysin O
Leukocidins
The concept of synergy
Combinations of microorganisms enhance the pathogenicity of each other.
Example:
After viral infection of an epithelial surface e.g. herpes simplex keratitis, the
commensal bacterial population can proliferate  bacterial keratitis.
Commensal eye flora
The eye is sterile in utero and only acquires normal flora during birth.
1. Bacteria
- Staphylococcus epidermidis (40–45% of eyes) [Most common]*
- Staphylococcus aureus (25%)
- Diphtheroids ( 25–40%) [2nd most common]*
- Streptococcus viridans and streptococcus pneumonia (2–3%).
- Propioni-bacterium acnes
[The most common anaerobe, seen in chronic endophthalmitis and blepharitis]*
Commensal eye flora
2. Viruses: NO viral commensals of the eye.*
3. Protozoa: Demodex follicularum
4. Fungi: Up to 100 fungi are found on the lashes and lid margins
Demodex follicularum*
- It is a type of mites NOT ticks
- Common in old age (˃ 70 years) NOT in children
- Site: on lashes (can NOT be seen by slit lamp)
Produce translucent cylinders resembling clear plastic insulation at base of
lashes suggest the presence of demodex
- TTT: is difficult ! NOT easily removed by lid hygiene
Important ocular
bacterial pathogens
Gram positive
Staphylococcus - StreptococcusAerobes
Cocci
XXXXAnaerobes
Sporing e.g. Bacillus
NON-sporing e.g. Propioni-bacterium - corynebcaterium
Aerobes
Bacilli
Sporing e.g. Clostridium
NON-sporing e.g. Actinomyces
Anaerobes
G +ve
Staphylococci
• Gram-positive cocci - grow in clusters - aerobic, facultative anaerobic.
• Catalase +ve
• Oxidase –ve
• Coagulase +ve (S aureus, S. intermedius, S. hyicus)
• Coagulase -ve (S epidermidis, S. hemolysis)
• Causes: boil, carbuncle
• Sensitive to fusidic acid
G +ve
Staphylococci
Staph epidermidisStaph aureus
WhiteYellowColony
-ve+veHemolysis on blood agar
-ve+veCoagulase
Can do nosocomial infectionAt noseCommensal
Types:
- Staphylococcus aureus is coagulase positive*
- Staphylococcus epidermis is coagulase negative*
Staphylococci
Virulence factors:*
1. Enzymes:
- Coagulase: coats the bacterial cell  prevent phagocytosis*
- Hyaluronidase: breaks down hyaluronic acid  spreading of infection*
- Beta-lactamase  drug resistance*
2. Toxins:
- Epidermolytic toxin  scalded skin syndrome (SSS)
- Enterotoxin  food poisoning.*
3. Protein A   phagocytosis and inhibits complement G +ve
Can NOT resist phagocytosis by neutrophil
Staphylococci
Methods to identify staph
• Coagulase +ve
• Phosphatase +ve
• Fermentation to mannitol
• Golden appearance of colonies
G +ve
Staphylococci
Meticillin-resistant staphylococcus aureus (MRSA)
• Coagulase positive.*
• MRSA is often found in the anterior nares of asymptomatic carriers.*
• MRSA can cause severe infection due to its resistance to conventional
antibiotics.*
G +ve
Streptococci
Gram-positive cocci
Catalase negative.
Types:
1. Streptococcus pyogenes: 90% of streptococcal infections.
It is a β-haemolytic streptococcus  produces an erythrogenic toxin responsible
for the generalized erythematous rash seen in scarlet fever.
2. Streptococcus pneumonia:
It is an α-haemolytic diplococcus  meningitis or pneumonia
G +veThey are uncommon ocular pathogens.
Scarlet fever
+ve
Rembmber
StreptococcusStaph aureus
Oblong - stringRounded - grapeShape
-ve+veCatalase
One plane only2 planesDivided into
Bacillus
• Bacilli are large, aerobic, and spore forming.
Spores are visible as colourless refractile bodies. They consist of a central cortex
surrounded by a layered outer coat made from laminated keratin. This is
surrounded by a loose endospore.
Spores are NOT a means of reproduction* and are NOT metabolically active.
Spores allow the organism to survive long periods and are resistant to heat,
radiation, desiccation, and chemicals.
G +ve
• Spores resist antibiotics
• Spores are killed by autoclave
Bacillus
Examples:
• Bacillus anthracis: produces exotoxin and causes anthrax
• Bacillus brevis: produces the antibiotic bacitracin.
• Bacillus cereus: produces a toxin that can lead to food poisoning
(beware of cold/lukewarm rice)
G +ve
Clostridium
• Clostridia are anaerobic, spore-forming bacteria.
• They live commonly in soil, water, and decaying vegetation but can also be
found in the human gut.
• Some produce powerful exotoxins.*
• Types:
1. Clostridium tetani
2. Clostridium perfringens
Both are sensitive to penicillin*
G +ve
Clostridium
G +ve
Clostridium perfringensClostridium tetani
Gas gangreneTetanusCause
• Exotoxins  tissue damage
• Enterotoxin (sometimes)  food
poisoning
Exotoxins reach AHC presynaptic
terminals of inhibitory interneurons
 tonic spasm of the voluntary
muscles.
Produce
Nagler reaction identification technique
that distinguishes different strains of C.
perfringens.
The terminal spore gives it
a drumstick appearance.*
Some strains of C. perfringens can lead to conjunctivitis, necrotizing keratitis,
and a nasty suppurative panophthalmitis with retinal necrosis.
Clostridium
• Tetanus can occur weeks after initial infection
• Diagnosis depends on clinical picture
• TTT: Antitoxin IV or IM
TTT is ineffective if toxin enters the nervous system
G +ve
Coryne-bacteria
Aerobic, non-spore-forming organisms
- Live as commensals on the skin and mucous membranes.
G +ve
Organisms can invade intact corneal epithelium:
CHANNEL
• C-Corynebacterium diphteriae
• HA-Haemophilus influenza
• N-Neisseria gonorrhea
• NE-Neisseria meningitides
• L-Listeria species
Propioni-bacterium
Non-spore-forming.
Anaerobes
Propionibacterium acnes is commensal in the eye (in eyelids and within the
meibomian glands)  chronic blepharitis and low-grade & delayed*
endophthalmitis following cataract surgery.
Sensitive to vancomycin
G +ve
Actinomycetes
• Gram +ve bacteria grow in the form of a mycelial network similar to
filamentous fungi. Their hyphae are small (less than 1 μm in diameter).
1. Actinomyces israelii is a non-spore-forming anaerobic* bacterium producing
filaments, diphtheroid, and coccoid forms.
• Brown and Brenn Gram staining differentially stain the filaments.
• Cultured in liquid media such as brain–heart infusion agar.
• TTT: sensitive to penicillin and cephalosporins. G +ve
This is a common cause of lacrimal canaliculitis and dacrocystitis
forming white–yellow colonies known as sulphur granules that can be seen
clinically.
Actinomycetes
2. Nocardia are branched filamentous aerobic actinomycetes. They are related to
mycobacteria as they are weakly acid fast.
G +ve
Nocardia asteroides is the most frequent cause of nocardial keratitis and
endophthalmitis
Gram negative
NeisseriaeAerobes
Cocci
XXXXAnaerobes
• Pseudomonas
• Haemophilus
• Moraxella
Aerobes
Bacilli
• EnterobacteriaAnaerobes
G -ve
Neisseriae
Strict aerobic*, Gram-negative cocci
Grow on :
- Enriched chocolate media such as Thayer– Martin medium [chocolate sheep
blood + antibiotics (Vancomycin+Colistin+Nystatin)]*
- Heated blood agar with high carbon dioxide concentrations
- Oxidase +ve
Types:
• Neisseria meningitides (meningococcus)
• Neisseria gonorrhoea (gonococcus).
G -ve
Neisseriae gonococci
• Neisseria gonococci virulence factors:
1. Produce endotoxins
2. IgA protease [destroy secretory IgA]
• Effects of gonococcus 
- Gonorrhea
- Ophthalmia neonatorum (commences 2–3 days post partum)
TTT: Cephalosporin or penicillin is used to treat mother and child.
[ Senstive to silver nitrate ]
G -ve
Pseudomonas
Aerobic, non-motile
It produces a water-soluble green pigment known as pyocin.
It is dependent on iron for growth.
It produces toxin A, which acts to breakdown protein glycol matrices.
G -ve
Pseudomonas
It does NOT penetrate healthy corneal epithelium well,
but the action of its numerous proteases allows it to pass through traumatized
epithelium easily  keratitis.
Risk factors for pseudomonas infection include:
• Corneal trauma e.g. by contact lens
[ The most common organism related to corneal ulcer after contact lens wear]*
• Thermal burns
• Vitamin A deficiency
• Immune suppression.
G -ve
Can cause osteomyelitis
Haemophilus
Small, non-motile, non-spore-forming aerobic
It requires haematin (X factor) & nicotinamide adenine dinucleotide (V factor)
[which is produced by other bacteria] to grow.
Most strains are sensitive to third-generation cephalosporins such as cefotaxime
and to chloramphenicol.
G -ve
Haemophilus influenzae
• Culture: chocolate or blood agar (low CO2 concentration) and exhibits
‘satellitism’ around colonies of staphylococci grown in chocolate agar or
brain–heart infusion agar.
• Types:
1. Capsulated H. influenza: serotypes A–F
2. Non capsulated H. influenza:
• H. egyptius (Koch–Weeks bacillus)  conjunctivitis
• H. ducreyi  chancroid and Parinaud’s ocular glandular syndrome.
G -ve
H. influenzae type B:
Causes:
-Upper respiratory tract infections [e.g. sinusitis]
 Local spread  orbital cellulitis
 Haematogenous spread to globe  endophthalmitis, e.g. post
intraocular surgery
- Meningitis and epiglottitis.
G -ve
Moraxella
• Gram –ve diplobacillus
• Grow on Mc Conkey
• Cause: purulent conjunctivitis, angular blepharitis & corneal ulceration.
• Sensitive to chloramphenicol
G -ve
Enterobacteria
Aerobic and facultative anaerobic bacteria - Grow on MacConkey agar.
Motile except Shigella and Klebsiella
Types:
• Lactose fermenting: e.g. E-coli, Klebsiella
• Non-lactose fermenting:
o Urease positive, e.g Proteus
o Urease negative, e.g. Salmonella
G -ve
G -ve
Enterobacteria
• E-coli is the most common cause of urinary tract infection (UTI). E. coli are
motile with polar flagella.
• Serratia marcescens is an enteric organism that can contaminate contact lens
solutions. It can cause infective keratitis and endophthalmitis.**
G -ve
Spirochaetes
Spirochaetes
Spirochaetes
• Spirochaetes have a helical structure with flagellate structures allowing for
spiral motility
Spirochaetes
Borrelia
• Borrelia are large, slender organisms visualized by dark ground microscopy.
Spirochaetes
Borrelia
• Borrelia burgdorferi is transmitted through the intermediate host of the tick
Ixodes ricinus (a deer tick endemic in deer- populated areas such as the New
Forest).
The tick has three life cycle stages: larva, nymph, and adult.
The primary host for Borrelia burgdorferi is the rodent that is required at the
nymph stage of the tick’s life cycle. Deer serve as the mating ground for the adult
tick and provide a blood meal for egg production.
• Humans acquire Borrelia burgdorferi from an infected nymph*. Nymphs tend
to feed in late spring and early summer.
• Borrelia burgdorferi  Lyme disease (arthritis, conjunctivitis, and
encephalomyelitis). Lyme borreliosis is detected by immuno-fluorescent assay
or ELISA to measure specific IgM and IgG antibodies. Spirochaetes
Borrelia
• Borrelia burgdorferi  Lyme disease (arthritis, conjunctivitis, and
encephalomyelitis).
• Lyme borreliosis is detected by immuno-fluorescent assay or ELISA to
measure specific IgM and IgG antibodies.
Spirochaetes
Treponemes
• Shape: outer envelope, a peptidoglycan cell wall, and a cytoplasmic
membrane.
• Motile
• Microaerophilic helical bacterium
• Temperature sensitive and hence does NOT survive for long outside of the
body*, so can NOT grow on artificial media
• It is the cause of syphilis.
• Sensitive to pencillin*
• Bacteria is found in lesion of (1ry, 2ry NOT 3ry $)
Spirochaetes
Treponemes
• Treponemes are visible on dark ground microscopy OR by silver staining
(Levaditi silver method).
Serology is used as the gold standard for diagnosis:
1. Venereal Diseases Research Laboratory (VDRL) [NOT specific]
[ diagnose aslo malaria, leprosy & collagen diseases]
2. Reagin test
3. Complement fixation tests
4. Fluorescent treponemal antibody absorption (FTA-Abs): specific [used now]
Spirochaetes
• FTA-Abs becomes positive first and remains positive after treatment.
• Test 1,2,3 return to normal after treatment
Acid-fast
bacilli
Acid-fast bacilli
• Mycobacteria are acid and alcohol fast. They are aerobic non-sporing rods
Stain: Ziehl–Neelson stain
Growth: Lowenstein–Jensen medium which contains egg and have a very slow
generation time of 12–24 hours, which means cultures can take up to 8 weeks to
grow !!
Mycobacteria can NOT be stained with gram stain as waxy cell walls prevent them taking up
the Gram stain.
Acid-fast bacilli
• Only a few species of mycobacteria are pathogenic to humans:
• Mycobacterium tuberculosis  T.B  panuveitis by haematogenous spread
to the choroid.
• Mycobacterium leprae  leprosy  anterior uveitis (never posterior)
• Mycobacterium avium and Mycobacterium fortuitium: these are more
commonly seen in immunosuppression, e.g. AIDS, and can lead to corneal
ulceration and endogenous endophthalmitis.
Mantoux test
• Purified protein derivative (PPD) is a screening tool for TB
• It is one of the major tuberculin skin tests used around the world
• It is largely replacing other tuberculin tests as Tine test & Heaf test
• NOT +ve in all TB cases
• Involves CD4 cells
• Procedure:
1. Inject purified protein derivative intradermally
2. Wait 48 to 72 hours
3. Measure diameter of induration (palpable raised, hardened area)
Mantoux test
Mollicutes
Mollicutes
• Mollicutes are unique in that they lack a cell wall.
Examples:
• Mycoplasma pneumonia
• Mycoplasma hominis
• Ureaplasma urealytica  may be  Reiter’s syndrome
Viruses
Viral characteristics
• Viruses are acellular* (require the cellular material from other organisms in
order to replicate) = obligate intracellular parasites.*
• A virus particle = virion consists of:
1. Viral genome (DNA or RNA)
‘capsomere’ refers to the morphological unit of viral genome
2. Capsid: protein shell [Capsids vary in shape: helical, cubid, or icosahedral]
3. Lipoprotein envelope surrounding capsid
• Viruses vary in size from 10 to 300 nm in diameter
• Viruses are classified according to: their constituent nucleic acid and morphology
Viral characteristics
• Bacteria & fungi are cellular
• Viruses are acellular
Virus release is by cell lysis or budding*
Viral replication
• Site of replication: the host nucleus or cytoplasm.
• Stages of viral replication:
1. Adsorption: attachment of the virus particle to a cell by random collision,
electrostatic attachment, or host cell receptors.
2. Penetration: by viropexis or fusion of the viral envelope and cell membrane.
3. Capsid removal: the capsid is removed by host cell enzymes.
Inclusion bodies: Synthesized viral particles can sometimes be seen on light microscopy.
They represent sites of viral synthesis or replication.
Viral replication*
4. Nucleic acid replication:
- Most DNA viruses replicate in the nucleus by host cell enzymes to make
mRNA and to replicate DNA. [Pox virus is an exception]*
- RNA viruses replicate in the cytoplasm.*
RNA viruses are unable to borrow host cell enzymes because none exist for
copying RNA from RNA. Use of reverse transcriptase to make DNA from an
RNA template overcomes this.
DNA virus will therefore produce intra-nuclear inclusion bodies.
RNA virus will therefore produce intra-cytoplasmic inclusion bodies.
Cytomegalovirus produces both cytoplasmic and nuclear inclusions.
The nuclear inclusions are referred to as ‘owl’s eye’ inclusion bodies
Viral transmission
Vertical, horizontal, or BOTH
• Vertical transmission: From mother to fetus e.g. CMV or rubella
• Horizontal transmission: From one individual to another by:
- Direct contact
- Faeco-orally (e.g. enteroviruses)
- Airborne-respiratory (e.g. paramyxoviruses)
- Parenteral routes e.g. HBV, HCV, HIV or rabies.
The cellular response to viral infection
• Cytopathic effect = visible cellular effect of virus infection includes:
Cell shrinking, rounding, inclusion bodies, and the formation of giant multi-
nucleate cells  cell death due to cytolysis or inhibition of cell metabolism.
• Chronic infection can result in:
o Latency: the viral genome is integrated into the host DNA. It does not
replicate until a trigger occurs, e.g. stress. A classic example of this is the HSV
o Persistence: the virus replicates at a very low rate.*
o Transformation: the virus initiates new cell properties  teratogenic change.
The host response to viral infection
• Inflammation and tissue damage can be due to:
- The direct effects of the virus
- The host response.
• Innate immunity:
- Barriers: (Cilia in the respiratory tract, acid in the stomach) can prevent
viruses invading the epithelial surface
- Fever: inhibits viral replication !!
• Aquired immunity: antibody, complement, and interferon, and the cellular
production of T and B lymphocytes, macrophages, and PMNL.
Viral pathogenicity
• Viruses enhance their pathogenicity through evasion of immune
mechanisms, by:
1- Mutations: changes in their antigenic surface  prevent detection by immune
cells.
oAntigenic drift: minor changes in antigenicity due to point mutations in the
viral genome.
oAntigenic shift: major change in antigenicity
2- Viruses have the ability to avoid complement:
Herpes simplex type 1 produces a C3b-binding molecule that facilitates
degradation of the alternative pathway molecule C3bBb convertase.
Viruses, unlike bacteria, do NOT have anti phagocytic coat*
Diagnostic tests and serology*
1. Direct viral isolation: by electron microscopy [replaced by other tests]
2. Serological techniques for detection of antigen or antibody: complement
fixation measures the reaction between viral antigen and a specific antibody,
and gives a direct measure of the consumption of complement added. In a
positive test the erythrocytes are not lysed by complement as it has already
been bound by the antigen/antibody reaction.
3. ELISA
4. Radioimmunoassay (RIA)
5. Reverse passive haemagglutination e.g. detection of HBsAg
Diagnostic tests and serology
6. Organism-specific humoral responses can be detected in ocular fluids:
Goldmann and Witmer reported a method to calculate whether antimicrobial
antibodies are being produced within tissues and hence demonstrating local
infection
7. PCR
Goldmann and Witmer coefficient (C)
C =
antibody titre in ocular fluid
antibody titre in serum
×
total IgG in ocular fluid
total IgG in serum
C ≥ 3, local antibody production present
Important ocular viral pathogens
RNA virusesDNA viruses
ParamyxovirusHerpes viruses
• Herpes simplex
• Varicella zoster
• Cytomegalovirus
• Epstein–Barr virus (EBV)
TogavirusAdenovirus
RetrovirusPapovavirus
Pox virus
Herpes viruses
Double-stranded DNA viruses with an icosahedral capsid.*
• Herpes simplex
• Varicella zoster
• Cytomegalovirus
• Epstein–Barr virus (EBV)
Members of the herpes virus family are the causative agents of acute retinal necrosis.
HSV & HZV more common //// CMV & EBV more rare
Adenovirus do NOT cause ARN
DNA
virus
Herpes simplex virus
Types:
1. HSV-1: most commonly associated with oral infection [Above waist]
[rarely  Herpes gladitorum (scrumpox)]*
2. HSV-2: most commonly associated with genital infection [Below waist]
Pathology:
1. 1ry infection: usually in childhood and is subclinical
2. 2ry (reactivation):  with:
- Immunosuppression, malignancy, and with the use of topical steroid.
- Hormonal changes, ultraviolet light, stress, and trauma. DNA
virus
• There are four stages in the life cycle of HSV-1 (Table 5.7): ?? ‫؟‬ ‫الجدول‬
1. Entry into the host and replication at this peripheral site (e.g. eyes, skin, or
mucosae).
2. Spread to the axonal terminals of sensory neurons followed by retrograde
intra-axonal transport to neuronal cell bodies in sensory and autonomic ganglia.
3. Latency in ganglia, e.g. trigerminal ganglion.
4. Reactivation with the production in the ganglia of infectious virus transported
anterogradedly to the periphery, with further replication at the site of primary
infection.
A culture or smear of the affected tissue shows intraepithelial vesicles and contains
syncytial giant cells and eosinophilic intranuclear inclusions. DNA
virus
???
Expression of viral genes changes throughout the life cycle. A viral structural
protein known as VP16 enhances transcription of these genes:
• Immediate–early (regulatory genes)
• Early (viral DNA replication)
• Late (structural proteins of the virus)
DNA
virus
Effect of HSV on eye:
- Conjunctivitis
- Keratitis
- Uveitis
- Uveoretinitis.
The viral envelope is highly immunogenic and stromal disease, e.g. disciform keratitis, is due
to a hypersensitivity reaction to viral antigen rather than the virus itself.
DNA
virus
Varicella zoster virus
1ry infection  chickenpox (vesicles on the trunk, face, and mouth).
Reactivation  shingles [If reactivated in the trigeminal ganglion  HZO]
N.B. About latency
1. Latency occurs: in certain ganglia, most commonly the trigeminal* followed
by thoracic lumbar, and cervical nerve ganglia.
2. Cell-mediated* immunity maintains the virus in its latent state.
Reactivation can be due to concurrent illness, immunosuppression, or radiotherapy.
DNA
virus
Cytomegalovirus (CMV)
Cytomegalovirus infection is very common, but it is subclinical in 80% of cases.
• The virus is shed from the genital or urinary tracts and becomes latent in
lymphocytes.
• Reactivation can occur during pregnancy  asymptomatic infection of fetus.
If the 1ry infection occurs in pregnancy (especially in 1st trimester)  congenital
anomalies (= cytomegalic inclusion disease) 
o Strabismus
o Chorioretinitis
o Microphthalmia
o Hepatitis
o Post-transfusion mononucleosis.
DNA
virus
Cytomegalic inclusion disease
DNA
virus
CMV infection in the immunosuppressed can lead to:
 CMV retinitis
 Transplant rejection
 CMV pneumonia.
DNA
virus
Cytomegalovirus produces both cytoplasmic and nuclear inclusions.
The nuclear inclusions are referred to as ‘owl’s eye’ inclusion bodies
DNA
virus
Epstein–Barr virus
Cause:
- Infectious mononucleosis = glandular fever.
- Burkitt’s lymphoma (EBV can transform B lymphoblasts)
- Nasopharyngeal carcinoma
DNA
virus
N.B.
Organisms can cause latency:
- T.B.
- HSV (latent in trigeminal ganglion)
- HZV (latent in trigeminal ganglion or ……… )
- CMV (latent in lymphocyte)
- Chalamydia
2. Adenovirus
Double-stranded DNA viruses with icosahedral capsid without* an envelope.
Transmission to eye: air-borne or direct contact with:
- Ocular secretions
- Contaminated instruments, eye drops
- Hands of health professionals
Serotypes: 47
• Serotypes 1, 2, 3, 5, 7, and 14 are associated with pharyngoconjunctival fever.
• Serotypes 8, 19 & 37 are associated with epidemic keratoconjunctivitis.
Adenovirus is highly prolific:
a single infected cell can produce 10,000 virions per cycle of 30–36 hours.*
2. Adenovirus
• Adenovirus has the ability to avoid immune defenses by:
suppressing transcription and presentation of MHC Class I molecules on the
infected cell surface.*
Adenovirus can produce proteins that interact with p53 & the retinoblastoma gene 
some strains have oncogenic properties in animal models.*
DNA
virus
Adenovirus  adenoviral keratitis
TTT: Acyclovir has NO role !!!
Unknown TTT, but steroid  it
Adenovirus  is cultured on HeLa cell line
3. Papovavirus
Human papilloma virus
Double-stranded DNA virus of which there are over 60 types.
The DNA is arranged into a circular molecule with areas known as open reading
frames. These are divided into early (E) and late (L) regions.
E regions code for viral replication proteins.
Effect of HPV:
1. HPV generally infects epithelial cells and some possess the ability to induce
proliferation (benign papilloma).
HPV 6 and HPV 11 are associated with benign conjunctival papillomata.
DNA
virus
Human papilloma virus
2. Malignant change d.t insertion of a particular type of HPV DNA into the host
genome.
The E2 gene is an important regulator of HPV and disruption of this gene is
found in all tumors that have HPV DNA integration.
• Disruption of E2   production of E6 and E7.
o E6 forms complexes with p53 (tumour-suppressor gene) and hence promotes
oncogenesis. This is seen in HPV 16 and HPV 18. They cause conjunctival
dysplasia and carcinoma.
o E7 inactivates the gene product of the retinoblastoma tumour-suppressor gene.
DNA
virus
4. Pox virus
DNA viruses that grow in the cytoplasm with very limited nuclear involvement.
This is because they possess a DNA-dependent RNA polymerase, a transcript
poly-A polymerase, a capping enzyme, and methylating enzymes can replicate
independently of the host cell.
DNA
virus
Pox virus
Molluscum contagiosum
The most common pox virus to cause ocular infection.
It is commonly seen in children and is spread by direct contact or through
contaminated fomites or water. Adult cases tend to be sexually transmitted.
Effects:
- Conjunctivitis
- Pearly white or flesh-coloured lesions on the face, extremities, and trunk.
- Epidermal hyperplasia is due to the production of a protein related to the
conserved domain of epidermal growth factor.
DNA
virus
Molluscum virion can be seen by light microscope !
RNA viruses
Paramyxovirus
Measles
C/P: prodroma of: cough, coryza, and conjunctivitis THEN fever*
Complications:
• 2ry bacterial respiratory infection
• Encephalitis(1:1000 case)*
• Subacute sclerosing panencephalitis (SSPE) (rare) , which can be associated
with chorioretinitis and maculopathy
RNA
virus
• Measles can cause death!!: by 2ry bacterial infection
• Measles can cause blindness!!: by corneal scarring (which occur in patients with vitamin A
deficiency)
Paramyxovirus
Mumps
C/P: fever and parotitis
Complications:
- Orchitis and reduced fertility, pancreatitis, and meningo-encephalitis.
- Ocular complications include dacryoadentitis and extraocular muscle palsies.
RNA
virus
Recent infection characterized by  antibody titre to S antigen
(Antibody to V antigen appear later but persists for years)
Togavirus
Rubella
Rubella is subclinical in 80% of small children and 10% of adults.
Incubation period: 2-3 weeks
If a mother is infected in the 1st trimester of pregnancy  congenital rubella
syndrome :
- Miscarriage or stillbirth may occur.
- Congenital defects
For this reason a live attenuated vaccine is given to children under the age of 12
years.
RNA
virus
Togavirus
Rubella
- Congenital defects include:
• Eye:
o Cataract
o Microphthalmia
o ‘Salt and pepper’ retinitis
o Glaucoma
• Ear: Neurosensory deafness
• Heart: patent ductus arteriosus RNA
virus
NOT conductive deafness
N.Bs
• Rubella: maximal infectivity coincide with appearance of rash
• Measles: maximal infectivity before appearance of rash
• Live attenuated vaccines:
o MMR (Measles – Mumps – Rubella)
o Polio
o Yellow fever
RNA
virus
N.Bs
• Measles & mumps do NOT cause congenital anomlaies
• Infection that cause congenital anomalies:
o Toxoplasmosis
o Rubella
o CMV – Chicken pox
o Herpes - HIV
o Syphilis
o Listeria monocytogenes
RNA
virus
TORCH S.L
Retrovirus
1. Human T-cell lymphotrophic viruses (HTLVs)
• They are associated with:
- T-cell lymphomas, including cutaneous lymphomas (mycosis fungoides
and Sézary syndrome)
- Progressive myelopathy
- Uveitis in some ethnic groups.
RNA
virus
Retrovirus >>
1. Human T-cell lymphotrophic viruses (HTLVs)
HTLV-1
- Endemic in Japan, the West Indies, and central Africa.
- Transmitted vertically and horizontally through sexual contact or parenteral
transmission and infects primarily CD4+ lymphocytes.
- HTLV-1 replication is regulated by two unique genes known as tax and rex.
Tax transactivates genes for IL-2 and IL-2 receptors, hence making clonal
expansion independent of IL-2 autocrine activity !!
RNA
virus
Retrovirus >>
2. Human immunodeficiency virus
• HIV-1 and HIV-2 are retroviruses possessing the ability to infect CD4+
lymphocytes. They contain a single strand of RNA and reverse transcriptase.
They differ in the structure of their glycoprotein envelopes.
• The main genomic components of HIV include:
– Structural genes: gag gene codes for p55, which is cleaved into p24, p18,
and p15. The envelope gene codes for a glycoprotein enclosing the viral
particle. This glycoprotein is cleaved to form two envelope proteins gp 4
and gp 120.
– Regulatory genes: these act to stimulate viral transcription and cause
proliferation of adjacent healthy cells, e.g. B cells and Kaposi’s sarcoma.RNA
virus
2. Human immunodeficiency virus>>
Immunological effects of HIV
• HIV gains entry to CD4 lymphocytes via binding to CD4 antigen and CXC
chemokine receptors on the cell surface.
• It therefore makes sense that this virus can infect other cells such as monocytes
and microglial cells expressing these receptors (Table 5.8).
• Viral infection of CD4+ T cells leads to the formation of a multinucleate cell
and cell death. The virus therefore dimin- ishes the cell-mediated immune
response predisposing to viral, protozoan, and some neoplastic conditions.
• HIV is known to cause polyclonal antibody produc- tion
(hypergammaglobulinaemia) and the production of autoantibodies.
• The body’s immune response against HIV is reduced because the latent virus is
RNA
virus
2. Human immunodeficiency virus
Manifestation of HIV infection
- Asymptomatic
- Acute febrile illness during seroconversion
- Persistent generalized lymphadenopathy.
Seroconversion to anti-HIV antibody occurs 4–12 weeks after acute infection.
RNA
virus
2. Human immunodeficiency virus
Tests for HIV infection include:
1. HIV culture: the virus is isolated by co-culture with normal lymphocytes in
the presence of IL-2. Multiplication is detected by reverse transcriptase assay or
HIV antigen expression in culture.
2. HIV antigen detection: the first detectable protein is actually p24 (core
protein) at 2–3 weeks followed by the antibody response below.
3. HIV antibody detection: by ELISA or Western blotting.
Western blots demonstrate both IgG and IgM antibodies against envelope and
structural proteins coded for by the gag gene (p55).
RNA
HIV can be detected in body fluids. It is usually obtained from peripheral blood.
2. Human immunodeficiency virus
4. HIV nucleic acid: PCR can be used to amplify HIV genome RNA.
After PCR, ELISA estimation detects as little as 50genome numbers per millilitre
of blood. This can be used to estimate viral load. This can be used alongside
CD4+T-cell count when monitoring response to treatment.
A fall in CD4+ T-lymphocyte count and anti-p24 antibody titre with a rise in titre
of core antigen can demonstrate a rise in viral load and can precede the onset of
AIDs.
RNA
virus
2. Human immunodeficiency virus
Progression to AIDS
Epidemiological data show that there are three types of AIDS transmission:
• Type 1: urban spread (USA and Europe) in homosexuals, heterosexuals, and
intravenous drug users
• Type 2: African spread, mainly heterosexual
• Type 3: South-east Asia, yet to be fully defined.
AIDS is defined as an illness characterized by one or more of the listed
Communicable Disease Centre (CDC) indicator diseases depending upon the
status of laboratory evidence of HIV infection. In addition to this the definition of
AIDS also includes all HIV-positive patients with CD4+ counts of < 200 per μl.
RNA
virus
2. Human immunodeficiency virus
• Some of the more common indicator diseases include:
• Pneumocystis carinii pneumonia
• Cytomegalovirus retinitis
• Cryptococcus
• 1ry lymphoma of the brain
• Pulmonary tuberculosis (TB)
• Invasive cervical carcinoma.
Before the advent of anti-retroviral therapies, up to 25% of patients with AIDS
presented with opportunistic ocular infection (Table 5.9). The most common of
these is CMV retinitis. RNA
virus
2. Human immunodeficiency virus
Highly active antiretroviral therapy (HAART)
HAART is used in the treatment of both AIDS and HIV
HAART acts to increase CD4+ T-cell counts and restores antigen-specific
responses. It involves the use of a combination of agents, including:
Reverse transcriptase inhibitors, e.g. zidovudine—zidovudine is phosphorylated
in both infected and uninfected cells by thymidine kinase. This phosphorylation
produces zidovudine-TP, which acts to inhibit viral reverse transcriptase and also
promotes RNA chain termination prematurely.
RNA
virus
2. Human immunodeficiency virus
Proteinase inhibitors, e.g. indinavir—indinavir inhibits recombinant HIV-1 and
HIV-2 proteinase and therefore prevents cleavage of viral precursor pro- teins
producing immature non-infectious particles
• Indinavir is used in combination with a nucleoside analogue.
• Nucleoside analogues—chain terminators of HIV reverse transcriptase
RNA
virus
‫االميونيتي‬ ‫ف‬ ‫كان‬ ‫كالم‬ ‫حبة‬
AIDS
AIDS
HIV‫لسه‬
HIV is a retrovirus that infects CD4+ T cells, DC, and macrophages  their destruction and a defective
immune system.
Sub-types: [There is a possibility of more HIV subtypes]
- HIV-1
- HIV-2
Initial infection is characterized by an influenza-like illness, which is accompanied by a massive increase in
viral load and a decrease in circulating CD4 cells.
This is associated with the production of antibodies and is called seroconversion
There then follows a clinically asymptomatic period, where numbers of CD4 + cells gradually reduce.
Eventually patients have so few CD4 + T cells left that they are unable to mount reasonable responses and now
have AIDS. This can take from 6 months to 20 years, but eventually will occur in all HIV sufferers.
HIV
The following are useful in diagnosis of HIV infection :
• PCR
• ELISA
• P24 protein assay
• Immunoglobulin assay
• CD4:CD8 ratio
#Chua
Ocular fungal
pathogens
Fungi
• Fungi are eukaryotic organisms.
• They contain both DNA and RNA,
• They can reproduce sexually.
• They are dependent on exogenous sources of food and are therefore either
parasitic or saprophytic. [heterotrophs]
• They are Gram-positive (Both yeasts and filamentous fungi)
Fungi
• Groups of fungi:
1. Yeasts: unicellular.*
2. Filamentous fungi (moulds): contain branching filaments “mycelium”.
Mycelia absorb nutrients and produce reproductive spores.*
3. Dimorphic fungi (a mixture of both of the above)
Fungi
• Groups of fungi:
1. Yeasts:e.g.
- Candida albicans
- Cryptococcus neoformans
2. Filamentous fungi (moulds) :e.g.
- Aspergillus fumigates
- Mucoraceae
- Actinomyces israelii
3. Dimorphic fungi e.g. Histoplasma capsulatum
Detection of fungi
1. Microscopy and cyto-pathological: distinguishing morphology
2. Sabouraud’s medium (glucose-peptone agar, pH 5.6) is used to culture fungi.
3. Immunofluorescent techniques can be used to determine antibody titres for
specific fungal infections.
4. PCR can be used to detect fungal DNA from the vitreous in posterior
intraocular inflammation.
Stains useful for identifying fungi
- Gomori methenamine-silver (Black)
- Haematoxylin and eosin (pink)
- PAS (purple)
Gram stain can NOT be used for fungal identification
Fungi
• Most fungi that cause orbital infections are normal commensals of the
respiratory, gastrointestinal, and female genital tracts and can be found as part
of the normal commensals of the conjunctival sac.
Fungi
• Factors predisposing to fungal disease in the eye:
1. Exogenous:
• Local trauma: exogenous mycotic infection may follow a local corneal abrasion with
vegetable matter, e.g. if a foreign body is present
• Contact lens wear
• Topical antibiotic and steroids
2. Endogenous:
• Immunocompromised : haematogenous
• Non-ketotic diabetic ketoacidosis from adjacent air sinuses
• Contamination of indwelling catheters or intravenous lines
Yeasts - Candida albicans
• Oval unicellular fungus that can reproduce by budding OR mycelation*
Candida albicans is a budding yeast form on Sabouraud’s glucose medium.
If aeration is reduced mycelium or pseudomycelium can form.
Candida is the most frequent cause of endogenous fungal endophthalmitis.
• It is a normal commensal of the muco-cutaneous surfaces: gastrointestinal,
genitourinary, and respiratory tracts.
• Predisposing factor for candida infection: Diabetes mellitus, malignancy,
liver disease, prolonged antibiotic therapy, alcoholism & intravenous drug use
Contaminated indwelling venous catheter tips are the most common source of
infection in these patients.
Yeasts - Candida albicans
• Culture: Sabouraud’s glucose media or blood agar. It forms dome-shaped
creamy white colonies at 24–48 hours.
Yeasts - Cryptococcus neoformans
• It is a true pathogen
• It is found in pigeon droppings.
• Cause: “cryptococcosis”
- Lung infections following inhalation.
- If spread haematogenously 
oMeningoencephalitis
oChronic endophthalmitis
Aspergillus is NOT true pathogen
(it is opportunistic)
Filamentous fungi - Aspergillus
• Aspergilli are found in decomposing plant debris.
• Their spores can  aspergillosis if inhaled.
• Inhaled spores can germinate in the lumen of the bronchi 
IgE-mediated allergic response (type I hypersensitivity)
or
Production of IgG antibodies and complement activation. (type II
hypersensitivity)
• Invasive aspergillosis is seen in immunocompromised patients.
• Aspergilloma “mycetoma” refers to a mass of mycelia and is found in lung
cavities after healed TB, bronchiectasis, or sarcoidosis.
Filamentous fungi - Aspergillus
• Aspergillus fumigatus is an opportunistic pathogen. It can cause:
- Conjunctivitis
- Keratitis
- Endophthalmitis
- Granulomatous orbital inflammation.
Filamentous fungi - Mucoraceae
• They are found in soil, air, ventilation systems, and the nose and pharynx.
• Shape: broad, irregular non-septate hyphae that branch at right angles
• Iron is an important growth factor for the Mucorales.
• Stain best with Gomori methenamine-silver, haematoxylin and eosin, and PAS.
Class: Zygomycetes
Order: Mucorales
Family: Mucoraceae
Filamentous fungi - Mucoraceae
• Inhaled spores are usually destroyed by macrophages
but in an acidotic environment phagocytosis is compromised and infection can
occur  mucormycosis.
Mucormycosis ~ zygomycosis
It can be caused by: Rhizopus, Mucor, and Absidia.
Most commonly seen in:
- Non-ketotic DKA (diabetic ketoacidosis)
- Chronic illness e.g. metastatic neoplastic disease.
C/P: orbital cellulitis  cerebrorhinoorbital syndrome, which can be fatal.
Filamentous fungi - Actinomyces israelii
NOW, it is known to be bacteria that mimic fungus
See before
Dimorphic fungi
• The yeast form is found in infected tissues and can lead to intraocular
inflammation, including:
• Optic neuritis
• Chorioretinitis
• Panuveitis.
Dimorphic fungi - Histoplasma capsulatum
• Soil fungus that is endemic in the Mississippi delta.
• Transmission: by inhalation of mycelial fragments and/or spores with dust
particles  mild febrile illness or asymptomatic.
Around 70% of people living in this area and the Ohio River valley have positive
histoplasmin skin test reactivity.
Dimorphic fungi - Histoplasma capsulatum
Histoplasma capsulatum  Histoplasmosis
‫دلوقتي‬ ‫بس‬ ‫العين‬ ‫عن‬ ‫تاثيره‬ ‫عن‬ ‫هنتكلم‬
• The organism reaches the choroid by haematogenous spread.  
- Active choroiditis is NOT common.
- Presumed ocular histoplasmosis syndrome (POHS): is a multifocal choroiditis
associated with the formation of subretinal neovascular membranes (CNV). It
is thought to be immunologically mediated in individuals exposed to the
fungus sensitive to amphotericin B and ketoconazole.
• At 26°C POHS exists in a mycelia phase and at 37°C it is a yeast.
Demonstration of this dimorphism is part of the necessary criteria for
identification of H. capsulatum on brain–heart infusion agar.
Presumed ocular histoplasmosis syndrome (POHS)
Classic triad:
1. Multiple white atrophic chorioretinal ‘histo’ spots about 200 μm in diameter
2. Peripapillary atrophy
3. Vitritis is absent
N.B.
TTT: Anti VEGF for the CNV
Antifungals (as amphotracin) are NOT benifical !!
No vitritis
Ocular
intracellular
parasites
Chlamydiae
• Chlamydiae are small bacteria without* a cell wall.
• They are unable to grow on normal media and are obligate intracellular bacteria.
• They grow well in McCoy cell culture media.
• Chlamydiae contain both DNA and RNA, and require host-derived ATP to survive and
replicate in the cytoplasm of the host cell.
• They divide by binary fission.
• The genus comprises three species:
o Chlamydia trachomatis
o Chlamydia psittaci
o Chlamydia pneumonia.
Chlamydia trachomatis
• Chlamydia trachomatis is divided into serotypes by immune fluorescence tests
• All are glycogen positive
• All have humans as their host.
• Different serotypes require different amino acids.
• Serotypes include:
o A–C: cause endemic trachoma and require tryptophan
o D–K: cause adult inclusion conjunctivitis (sexually transmitted)
o L1, 2, 3: cause lymphogranuloma venereum and require methionine.
Chalmydia A-C serotypes do NOT cause ophthalmia neonaorum
Chlamydia trachomatis
Chlamydia trachomatis exists in two forms:
• The elemental body = infectious form attaches to the host cell. It is enclosed
in a cytoplasmic vesicle inside the host cell and is spared lysosomal
degradation.
• The reticulate body = replicative form
This forms after 6–8 hours inside the host cell.
It divides for around 24 hours
and then returns to the elemental form.
Chlamydia trachomatis
• Diagnosis of chlamydia:
1. Giemsa staining of smears: basophilic intracytoplasmic inclusion bodies.
2. McCoy cells media culture
3. ELISA can be used to detect inclusions within 24 hours.
4. Antibody detection in the serum and tears can also be used and correlates
well with clinical activity.
Protozoa
• Protozoa are unicellular eukaryotic parasites.
• Humans can act as an intermediate host in their life cycle.
Protozoa - Toxoplasma gondii
• It is obligate intracellular parasite
• Cat is the definitive host.
• Intermediate host is human, rat or bird
• Transmission: faeco-oral, ingestion of uncooked meats, inhalation OR
transplacental.
Cell-mediated immunity with activated macrophages is the prime defense against toxoplasma.
Stages of infection:
1. Cell penetration: by primitive mouthpiece or conoid of the parasite, which
contains lytic enzymes.
2. Inside the cell: it protects itself from lysosomal destruction using a vacuole
Protozoa - Toxoplasma gondii
Life cycle of toxoplasma
• Merozoites  Gametocytes [occurs only in the cat intestinal epithelium]
• Microgametes  oocysts [excreted in the faeces and spore in soil at 1–5 days]
• Ingestion of eggs (sporozoites) by an intermediate host
• Sporozoites divide rapidly and travel to the lymph nodes inside white blood
cells.
• Extraintestinal spread can be to skeletal muscle, heart, brain, and the eye.
• Cysts enclose slowly dividing bradyzoites at these sites.
Protozoa - Toxoplasma gondii
Diagnosis:
- PCR
- Detection of local antibody ( by intraocular fluid samples)
However, in the majority of adult ocular toxoplasmosis the diagnosis is clinical.
Treatment:
- pyrimethamine, sulphadiazine, or clindamycin + ?
Ocular toxoplasmosis: steroid therapy may be added  to help resolution of intraocular
inflammation.
Protozoa - Toxoplasma gondii
Clinical manifestations of toxoplasmosis
• If mother is infected during 1st trimester  still birth, intracranial
calcification, mental retardation, and chorioretinitis.
• If mother is infected late in pregnancy  Asymptomatic retinal
inflammation and cyst formation may occur with chorioretinitis
• If infection acquired in childhood  meningoencephalitis.
• If infection acquired in adulthood  febrile illness with features similar to
infectious mononucleosis. Adult-acquired chorioretinitis can occur. Ocular
toxoplasmosis presents as a single discrete lesion in the choroid/retina.
• Recurrence presents as satellite lesions of the original scar.
Protozoa - Acanthamoeba
Found: in public water supplies, swimming pools, hot tubs, fresh water ponds,
lakes, bottled mineral water, and soil.
Can be cultured from nasopharynx of normal individuals
Most common subtypes in acanthamoebic keratitis are:
- A. castellani
- A. polyphaga
Cultured on: non-nutrient agar covered with killed E. coli
Protozoa - Acanthamoeba
Effect:
• Indolent corneal ulceration (most commonly in soft contact lens wearers)
Neovascularization occurs lately
Firstly the amoeba attaches to the epithelial surface; an epithelial defect may
assist in the adherence. Stromal changes are thought to occur due to collagenase
activity.
Protozoa - Acanthamoeba
• Acanthamoeba species exist in two forms:
1. Active trophozoite
2. Dormant encysted form.
Treatment: (long and may require more than one treatment):
• Aminoglycosides (neomycin)
• Diamidines (brolenes) These are active against trophozoites
• Imidazoles..
• Antiseptic biocides e.g. polyhexamethylene biguanide (also active against
cysts)
Protozoa - Acanthamoeba
H2O2 3% is used in disinfectant solution of contact lenses to kill
acanthamoeba*
Ocular
helminth
infections
Ocular helminth infections
• Helminths are parasites; often the human is essential in order for the helminth
to complete its life cycle. The immune response to helminth infection is
harmful to the host. A helminth infection initiates antibody production and
complement activation alongside a marked type I hypersensitivity reaction with
an allergic IgE response, IgE-dependent degranulation of mast cells, and an
eosinophilia.
• Helminths are classified as follows:
– Trematodes, e.g. Schistosoma
– Cestodes, e.g. Taenia, Echinococcus
– Nematodes, e.g. Toxocara, Filaria, Onchocerca, and Trichinella.
Trematodes (flukes)
Schistosomes
Schistosomes are the only trematodes that can cause ocular disease.
• Schistosomes are contracted from snails. The larvae known as cercariae
penetrate the skin and lymphatics. Immature worms enter the lungs and mature
here before spreading haematogenously. At this stage the schistosomes can
cause a granulomatous reaction in the ocular adnexae and/or subconjunctivally.
Cestodes
Taenia solium
• Taenia can be ingested from pork. The ingested larvae mature in the intestine
and reproduce. They cross the mucosa and can spread haematogenously to the
retina, causing chronic inflammation and fibrosis. This can lead to retinal
detachment.
Echinococcus granulosus
• This can cause hydatid disease and tends to be found in sheep-farming
communities. Humans are infected through ingestion of ova from infected dog
faeces. Larvae pass most commonly to the liver to produce hydatid cysts.
Ocular involvement can occur in the orbit, leading to proptosis.
Nematodes (round worms)
Toxocara canis (dogs) and Toxocara cati (cats)
• The natural hosts are dogs and cats. Humans are an accidental host and are not
necessary for completion of the life cycle.
• Toxocara canis is endemic in dog populations. Adult dogs and humans are
infected by ingestion of infective ova from soil or by ingesting uncooked meat
with larvae.
• First- and second-stage larvae remain within the eggshell. Third-stage larvae
are released into the intestine when the eggshell ruptures. They migrate via the
lymphatics to the blood. Haematogenous spread to lung, liver, brain, and eye
can occur.
• The larvae encyst in the end organ. The majority remain dormant here. In
pregnant bitches the larvae are activated and can migrate transplacentally to
puppies. Puppies and lactating bitches are the main source of infective ova.
Ova remain infective for several months and are able to survive extremes of
temperature (–25–35°C).
• Toxocara canis causes a chorioretinitis and uveitis.
• Specific IgM antibodies can be detected in the acute phase of the infection.
Serological tests can be negative and antibodies may be picked up in vitreous
or aqueous samples.
Treatment is with oral thiabendazole or albendazole with or without steroid.
Nematodes - Filaria
Filarial nematodes tend to be thread-like in appearance.
They promote a specific IgG response and a marked IgE response & eosinophilia
Immunity is directed towards the microfilarial stage or first-stage larvae
Nematodes – Onchocerciasis (River blindness)
Causative agent: Onchocerca volvulus and affects 30 million people worldwide.
It is endemic in West and Central Africa – Yemen – south America
Onchocerciasis is the most frequent helminthic ophthalmic infection.*
• Humans is the definitive host.
• Black fly (of Simulium type) are the intermediate host (contracting microfilaria
from the human)
Microfilaria mature to infective larvae in the black fly and when the black fly
bites a human the larvae are transferred into the skin. Here they mature for
around 1 year.
Nematodes - Onchocerciasis
Clinical picture:
Diagnosis: skin patch test
Prevention: Black fly eradication with DDT spraying of river basins
Treatment: ivermectin against microfilaria [Moxidectin is a newer &superior]
Eye “reach eye through blood”?Skin
• Keratitis  Corneal scarring
• Anterior uveitis
• Optic neuritis
• Chorio-retinitis
• Intense itching
• Skin papule
• Skin atrophy
• Depigmentation
Mazzotti reaction: symptom complex seen in patients after undergoing treatment
of onchocerciasis with the medication di-ethyl-carbamazine as dead or dying
microfilarias cause an inflammatory response
Quiz
Quiz
Nematodes - Loa Loa
Loa Loa is transmitted by the deer fly.
• Confined to central/west Africa
• It can infect the eye in the microfilarial stage and mature to an adult worm
subconjunctivally or subcutaneously.
• In addition it can cause a uveitis or subretinal lesions
• High eosinophilia
• TTT: Di-ethyl-carbamazine
Nematodes - Trichinella spiralis
Human infection can occur due to ingestion of undercooked meat.
- Larvae are able to infect extraocular muscles  Painful granulomatous
reaction and inflammatory myositis.
- Intraocular spread can occur  retinal haemorrhages, subretinal lesions, and
papilloedema.
Endophthalmitis
This can cause endophthalmitis after cataract surgery:
- Staph 
- Strept 
- Nisseria 
- Candida 
- Bacillus 
Corneal ulcer
This can cause corneal ulcer:
- Staph 
- Pseudomonas 
- Moraxella 
- Klebsiella 
- Serratia marcscene 
- Bacillus brevis 
Neuro-reinitis is caused by:
- Cat scratch
- Lyme
- CMV
- Toxoplasmosis -Toxocariasis
- Coasakie
- $
- HSV
- Infectious mononucleosis
- Parvovirus
- HBV

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Ocular - Microbiolgy

  • 3. Bacterial characteristics Bacteria are a group of unicellular prokaryotes* that contain: DNA & RNA.* NO nuclear membrane = DNA lies free in the cytoplasm* NO organelles in cytoplasm* Bacteria reproduce by binary fission.*
  • 4.
  • 5.
  • 7. Basic structure of bacteria* • Cell wall: in majority of bacteria. All walls contain a mucocomplex of muramic acid and are porous to all but except very large molecules.(10-20% of dry weight)* • Cell membrane: important osmotic barrier and the site of a number of important enzymes. • Plasmids: are fragments of DNA* that are found within bacteria and are thought to be involved in antibiotic resistance. • Flagella: for motility. • Pili: for conjugation (transfer of DNA from one bacterium to another) • Mesosomes: are cytoplasmic sacs with intense enzymic activity associated with division septa. Diameter ~ 1 μm
  • 8. Classifications of bacteria 1. According to morphology:  Cocci (round)  Bacilli (cylindrical) o Fusi-form (tapered at both ends) o Filamentous (long threads)  Spirochetes o Vibrios (spiral) bacilli
  • 9. Classifications of bacteria ???? 2. According to metabolism and growth: - Autotrophs: able to utilize simple inorganic compounds - Heterotrophs: can NOT synthesize all their organic requirements. Oxidation in the form of respiration and fermentation provide energy. - Strict aerobic bacteria : obtain energy by: respiration  - Strict anaerobes: obtain energy only by fermentation All bacteria need CO2 to initiate growth. Facultative anaerobes: aerobic bacteria that obtain energy by respiration  + fermentation
  • 10. Classifications of bacteria ???? 3. According to staining: - Gram staining - Ziehl-Neelsen staining - Others: • PAS stain and Gomori’s methenamine silver stain: selective for fungal elements, such as hyphae. • Acridine orange can detect fungi and bacteria such as Nocardia. • Immunofluorescent methods detect chlamydia and the protozoan Acanthamoeba
  • 11.
  • 12. Gram staining Steps: 1. Staining with crystal violet (blue–black) 2. Staining with iodine 3. Decolourizing with acetone 4. Counterstaining with diluted carbol-fuchsin (red).
  • 13. Ziehl–Neelsen staining Steps: 1. Staining with carbol-fuchsin 2. Gentle heating 3. Decolourization with acid and/or alcohol 4. Counterstaining with malachite green (modified Ziehl– Neelsen) or methylene blue (full Ziehl–Neelsen).
  • 14. Culture media for bacteria 1. Accoring to nutritional component: • Simple Medium (Most common in routine tests) e.g. Nutrient Broth, Nutrient Agar • Complex Medium as blood agar • Synthetic Medium
  • 15. Culture media for bacteria 2. Accoring to functional use or application : • Enriched Media e.g. Blood Agar & Chocolate Agar(H. influenza) • Selective Media: contain chemicals that inhibit the growth of some bacteria only e.g. - Thayer Martin medium: selective for Neisseria gonorrhoeae - Desoxycholate-citrate agar: permits the growth of salmonellae but inhibits Escherichia coli * - Lowenstein Jensen medium: for mycobacteria tuberculosis • Differential Media*: Mac Conkey’s Medium* distinguish between lactose fermenters and non lactose fermenters bacteria*
  • 16. MCQs • Nutrient broth is a watery extract of meat, containing partly digested protein, carbohydrate, and electrolytes. It is sterilised by heat and has a pH of 7.3. • Blood agar consists of nutrient agar with added defibrinated horse blood and is a good medium for fastidious and delicate bacteria. • Strict anaerobes require reducing agents (such as sodium thioglycoll ate, minced cooked meat or metallic iron) to support their growth.
  • 17. Microbiological investigation of bacterial keratitis OrganismInvestigation Identify Gram-positive or negative bacteriaGram stain BacteriaBlood or chocolate agar AnaerobesMeat broth NocardiaModified Ziehl-Neelsen MycobacteriumFull Ziehl-Neelsen MycobacteriumLowenstein–Jensen FungiAcridine orange PAS Immunofluorescence FungiSabouraud’s agar AcanthamoebaNon-nutrient E. coli seeded agar
  • 18. Bacterial virulence and pathogenicity Virulence: Degree of pathogenicity of the individual organism Pathogenicity is dependent on: • Ability to withstand environmental stress & survive outside the host: (for example spore formation, when conditions are favourable the spore germinates) • Ability to mutate • Ability to infect and incapacitate the host. Tissue invasion can occur due to a direct cytotoxic action or via release of toxins.
  • 21. Exotoxins Produced by Gram-positive bacteria.? Extremely potent Proteins 50 to 150,000 kDa Producing effects at sites distant to the primary site of infection Examples: Botulinum toxin from Clostridium botulinum. Exotoxins are easily destroyed by heat. Exotoxins are immunogenic so can also be modified and used in vaccinations.
  • 22. Endotoxins Endotoxins are normally released by dead or lysed Gram – ve bacteria. They are lipopolysaccharides of 100– 900 kDa derived from the cell wall and are required in large quantities to produce an effect. They are heat stable. Endotoxins activate: - Platelet aggregation - Hagman factor  activates clotting - Alternative complement pathway
  • 23. Endotoxins The systemic and immunological effects of endotoxin • Fever (d.t. release of IL-1)* • Tolerance: repeated exposure to the same endotoxin  antibody production and active removal of antibody/endotoxin complexes with cessation of a febrile response • Lethal shock: can occur after large doses of toxin • Schwartzman phenomenon: intravascular coagulation due to endothelial cell damage and platelet aggregation; tends to affect the lungs and kidneys • Activation of alternative complement pathway
  • 24. Enzymatic substances that enhance bacterial pathogenicity Mechanism of actionEnzyme Bacilli use this to disrupt collagen in connective tissueCollagenase Helps deposition of fibrin and coagulates plasma Fibrin coats the bacteria and therefore protects against complement Coagulase Hydrolyses hyaluronate in the extracellular matrix of connective tissue and hence facilitates the spread of the organism Hyaluronidase Activates fibrinolysin and converts plasminogen to plasmin, which dissolves fibrin clots and aids spread through tissues Haemolytic streptococci produce this Streptokinase Group A haemolytic streptococci produce enzymes that lyse RBCs and tissue cells, e.g. streptolysin O Leukocidins
  • 25. The concept of synergy Combinations of microorganisms enhance the pathogenicity of each other. Example: After viral infection of an epithelial surface e.g. herpes simplex keratitis, the commensal bacterial population can proliferate  bacterial keratitis.
  • 26. Commensal eye flora The eye is sterile in utero and only acquires normal flora during birth. 1. Bacteria - Staphylococcus epidermidis (40–45% of eyes) [Most common]* - Staphylococcus aureus (25%) - Diphtheroids ( 25–40%) [2nd most common]* - Streptococcus viridans and streptococcus pneumonia (2–3%). - Propioni-bacterium acnes [The most common anaerobe, seen in chronic endophthalmitis and blepharitis]*
  • 27. Commensal eye flora 2. Viruses: NO viral commensals of the eye.* 3. Protozoa: Demodex follicularum 4. Fungi: Up to 100 fungi are found on the lashes and lid margins Demodex follicularum* - It is a type of mites NOT ticks - Common in old age (˃ 70 years) NOT in children - Site: on lashes (can NOT be seen by slit lamp) Produce translucent cylinders resembling clear plastic insulation at base of lashes suggest the presence of demodex - TTT: is difficult ! NOT easily removed by lid hygiene
  • 29.
  • 30.
  • 31. Gram positive Staphylococcus - StreptococcusAerobes Cocci XXXXAnaerobes Sporing e.g. Bacillus NON-sporing e.g. Propioni-bacterium - corynebcaterium Aerobes Bacilli Sporing e.g. Clostridium NON-sporing e.g. Actinomyces Anaerobes G +ve
  • 32.
  • 33. Staphylococci • Gram-positive cocci - grow in clusters - aerobic, facultative anaerobic. • Catalase +ve • Oxidase –ve • Coagulase +ve (S aureus, S. intermedius, S. hyicus) • Coagulase -ve (S epidermidis, S. hemolysis) • Causes: boil, carbuncle • Sensitive to fusidic acid G +ve
  • 34. Staphylococci Staph epidermidisStaph aureus WhiteYellowColony -ve+veHemolysis on blood agar -ve+veCoagulase Can do nosocomial infectionAt noseCommensal Types: - Staphylococcus aureus is coagulase positive* - Staphylococcus epidermis is coagulase negative*
  • 35. Staphylococci Virulence factors:* 1. Enzymes: - Coagulase: coats the bacterial cell  prevent phagocytosis* - Hyaluronidase: breaks down hyaluronic acid  spreading of infection* - Beta-lactamase  drug resistance* 2. Toxins: - Epidermolytic toxin  scalded skin syndrome (SSS) - Enterotoxin  food poisoning.* 3. Protein A   phagocytosis and inhibits complement G +ve Can NOT resist phagocytosis by neutrophil
  • 36. Staphylococci Methods to identify staph • Coagulase +ve • Phosphatase +ve • Fermentation to mannitol • Golden appearance of colonies G +ve
  • 37. Staphylococci Meticillin-resistant staphylococcus aureus (MRSA) • Coagulase positive.* • MRSA is often found in the anterior nares of asymptomatic carriers.* • MRSA can cause severe infection due to its resistance to conventional antibiotics.* G +ve
  • 38. Streptococci Gram-positive cocci Catalase negative. Types: 1. Streptococcus pyogenes: 90% of streptococcal infections. It is a β-haemolytic streptococcus  produces an erythrogenic toxin responsible for the generalized erythematous rash seen in scarlet fever. 2. Streptococcus pneumonia: It is an α-haemolytic diplococcus  meningitis or pneumonia G +veThey are uncommon ocular pathogens.
  • 40. Rembmber StreptococcusStaph aureus Oblong - stringRounded - grapeShape -ve+veCatalase One plane only2 planesDivided into
  • 41. Bacillus • Bacilli are large, aerobic, and spore forming. Spores are visible as colourless refractile bodies. They consist of a central cortex surrounded by a layered outer coat made from laminated keratin. This is surrounded by a loose endospore. Spores are NOT a means of reproduction* and are NOT metabolically active. Spores allow the organism to survive long periods and are resistant to heat, radiation, desiccation, and chemicals. G +ve • Spores resist antibiotics • Spores are killed by autoclave
  • 42. Bacillus Examples: • Bacillus anthracis: produces exotoxin and causes anthrax • Bacillus brevis: produces the antibiotic bacitracin. • Bacillus cereus: produces a toxin that can lead to food poisoning (beware of cold/lukewarm rice) G +ve
  • 43. Clostridium • Clostridia are anaerobic, spore-forming bacteria. • They live commonly in soil, water, and decaying vegetation but can also be found in the human gut. • Some produce powerful exotoxins.* • Types: 1. Clostridium tetani 2. Clostridium perfringens Both are sensitive to penicillin* G +ve
  • 44. Clostridium G +ve Clostridium perfringensClostridium tetani Gas gangreneTetanusCause • Exotoxins  tissue damage • Enterotoxin (sometimes)  food poisoning Exotoxins reach AHC presynaptic terminals of inhibitory interneurons  tonic spasm of the voluntary muscles. Produce Nagler reaction identification technique that distinguishes different strains of C. perfringens. The terminal spore gives it a drumstick appearance.* Some strains of C. perfringens can lead to conjunctivitis, necrotizing keratitis, and a nasty suppurative panophthalmitis with retinal necrosis.
  • 45. Clostridium • Tetanus can occur weeks after initial infection • Diagnosis depends on clinical picture • TTT: Antitoxin IV or IM TTT is ineffective if toxin enters the nervous system G +ve
  • 46. Coryne-bacteria Aerobic, non-spore-forming organisms - Live as commensals on the skin and mucous membranes. G +ve Organisms can invade intact corneal epithelium: CHANNEL • C-Corynebacterium diphteriae • HA-Haemophilus influenza • N-Neisseria gonorrhea • NE-Neisseria meningitides • L-Listeria species
  • 47. Propioni-bacterium Non-spore-forming. Anaerobes Propionibacterium acnes is commensal in the eye (in eyelids and within the meibomian glands)  chronic blepharitis and low-grade & delayed* endophthalmitis following cataract surgery. Sensitive to vancomycin G +ve
  • 48. Actinomycetes • Gram +ve bacteria grow in the form of a mycelial network similar to filamentous fungi. Their hyphae are small (less than 1 μm in diameter). 1. Actinomyces israelii is a non-spore-forming anaerobic* bacterium producing filaments, diphtheroid, and coccoid forms. • Brown and Brenn Gram staining differentially stain the filaments. • Cultured in liquid media such as brain–heart infusion agar. • TTT: sensitive to penicillin and cephalosporins. G +ve This is a common cause of lacrimal canaliculitis and dacrocystitis forming white–yellow colonies known as sulphur granules that can be seen clinically.
  • 49.
  • 50. Actinomycetes 2. Nocardia are branched filamentous aerobic actinomycetes. They are related to mycobacteria as they are weakly acid fast. G +ve Nocardia asteroides is the most frequent cause of nocardial keratitis and endophthalmitis
  • 51. Gram negative NeisseriaeAerobes Cocci XXXXAnaerobes • Pseudomonas • Haemophilus • Moraxella Aerobes Bacilli • EnterobacteriaAnaerobes G -ve
  • 52. Neisseriae Strict aerobic*, Gram-negative cocci Grow on : - Enriched chocolate media such as Thayer– Martin medium [chocolate sheep blood + antibiotics (Vancomycin+Colistin+Nystatin)]* - Heated blood agar with high carbon dioxide concentrations - Oxidase +ve Types: • Neisseria meningitides (meningococcus) • Neisseria gonorrhoea (gonococcus). G -ve
  • 53.
  • 54. Neisseriae gonococci • Neisseria gonococci virulence factors: 1. Produce endotoxins 2. IgA protease [destroy secretory IgA] • Effects of gonococcus  - Gonorrhea - Ophthalmia neonatorum (commences 2–3 days post partum) TTT: Cephalosporin or penicillin is used to treat mother and child. [ Senstive to silver nitrate ] G -ve
  • 55. Pseudomonas Aerobic, non-motile It produces a water-soluble green pigment known as pyocin. It is dependent on iron for growth. It produces toxin A, which acts to breakdown protein glycol matrices. G -ve
  • 56. Pseudomonas It does NOT penetrate healthy corneal epithelium well, but the action of its numerous proteases allows it to pass through traumatized epithelium easily  keratitis. Risk factors for pseudomonas infection include: • Corneal trauma e.g. by contact lens [ The most common organism related to corneal ulcer after contact lens wear]* • Thermal burns • Vitamin A deficiency • Immune suppression. G -ve Can cause osteomyelitis
  • 57. Haemophilus Small, non-motile, non-spore-forming aerobic It requires haematin (X factor) & nicotinamide adenine dinucleotide (V factor) [which is produced by other bacteria] to grow. Most strains are sensitive to third-generation cephalosporins such as cefotaxime and to chloramphenicol. G -ve
  • 58. Haemophilus influenzae • Culture: chocolate or blood agar (low CO2 concentration) and exhibits ‘satellitism’ around colonies of staphylococci grown in chocolate agar or brain–heart infusion agar. • Types: 1. Capsulated H. influenza: serotypes A–F 2. Non capsulated H. influenza: • H. egyptius (Koch–Weeks bacillus)  conjunctivitis • H. ducreyi  chancroid and Parinaud’s ocular glandular syndrome. G -ve
  • 59. H. influenzae type B: Causes: -Upper respiratory tract infections [e.g. sinusitis]  Local spread  orbital cellulitis  Haematogenous spread to globe  endophthalmitis, e.g. post intraocular surgery - Meningitis and epiglottitis. G -ve
  • 60. Moraxella • Gram –ve diplobacillus • Grow on Mc Conkey • Cause: purulent conjunctivitis, angular blepharitis & corneal ulceration. • Sensitive to chloramphenicol G -ve
  • 61. Enterobacteria Aerobic and facultative anaerobic bacteria - Grow on MacConkey agar. Motile except Shigella and Klebsiella Types: • Lactose fermenting: e.g. E-coli, Klebsiella • Non-lactose fermenting: o Urease positive, e.g Proteus o Urease negative, e.g. Salmonella G -ve
  • 62. G -ve
  • 63. Enterobacteria • E-coli is the most common cause of urinary tract infection (UTI). E. coli are motile with polar flagella. • Serratia marcescens is an enteric organism that can contaminate contact lens solutions. It can cause infective keratitis and endophthalmitis.** G -ve
  • 65. Spirochaetes • Spirochaetes have a helical structure with flagellate structures allowing for spiral motility Spirochaetes
  • 66. Borrelia • Borrelia are large, slender organisms visualized by dark ground microscopy. Spirochaetes
  • 67. Borrelia • Borrelia burgdorferi is transmitted through the intermediate host of the tick Ixodes ricinus (a deer tick endemic in deer- populated areas such as the New Forest). The tick has three life cycle stages: larva, nymph, and adult. The primary host for Borrelia burgdorferi is the rodent that is required at the nymph stage of the tick’s life cycle. Deer serve as the mating ground for the adult tick and provide a blood meal for egg production. • Humans acquire Borrelia burgdorferi from an infected nymph*. Nymphs tend to feed in late spring and early summer. • Borrelia burgdorferi  Lyme disease (arthritis, conjunctivitis, and encephalomyelitis). Lyme borreliosis is detected by immuno-fluorescent assay or ELISA to measure specific IgM and IgG antibodies. Spirochaetes
  • 68. Borrelia • Borrelia burgdorferi  Lyme disease (arthritis, conjunctivitis, and encephalomyelitis). • Lyme borreliosis is detected by immuno-fluorescent assay or ELISA to measure specific IgM and IgG antibodies. Spirochaetes
  • 69. Treponemes • Shape: outer envelope, a peptidoglycan cell wall, and a cytoplasmic membrane. • Motile • Microaerophilic helical bacterium • Temperature sensitive and hence does NOT survive for long outside of the body*, so can NOT grow on artificial media • It is the cause of syphilis. • Sensitive to pencillin* • Bacteria is found in lesion of (1ry, 2ry NOT 3ry $) Spirochaetes
  • 70. Treponemes • Treponemes are visible on dark ground microscopy OR by silver staining (Levaditi silver method). Serology is used as the gold standard for diagnosis: 1. Venereal Diseases Research Laboratory (VDRL) [NOT specific] [ diagnose aslo malaria, leprosy & collagen diseases] 2. Reagin test 3. Complement fixation tests 4. Fluorescent treponemal antibody absorption (FTA-Abs): specific [used now] Spirochaetes • FTA-Abs becomes positive first and remains positive after treatment. • Test 1,2,3 return to normal after treatment
  • 72. Acid-fast bacilli • Mycobacteria are acid and alcohol fast. They are aerobic non-sporing rods Stain: Ziehl–Neelson stain Growth: Lowenstein–Jensen medium which contains egg and have a very slow generation time of 12–24 hours, which means cultures can take up to 8 weeks to grow !! Mycobacteria can NOT be stained with gram stain as waxy cell walls prevent them taking up the Gram stain.
  • 73. Acid-fast bacilli • Only a few species of mycobacteria are pathogenic to humans: • Mycobacterium tuberculosis  T.B  panuveitis by haematogenous spread to the choroid. • Mycobacterium leprae  leprosy  anterior uveitis (never posterior) • Mycobacterium avium and Mycobacterium fortuitium: these are more commonly seen in immunosuppression, e.g. AIDS, and can lead to corneal ulceration and endogenous endophthalmitis.
  • 74. Mantoux test • Purified protein derivative (PPD) is a screening tool for TB • It is one of the major tuberculin skin tests used around the world • It is largely replacing other tuberculin tests as Tine test & Heaf test • NOT +ve in all TB cases • Involves CD4 cells • Procedure: 1. Inject purified protein derivative intradermally 2. Wait 48 to 72 hours 3. Measure diameter of induration (palpable raised, hardened area)
  • 77. Mollicutes • Mollicutes are unique in that they lack a cell wall. Examples: • Mycoplasma pneumonia • Mycoplasma hominis • Ureaplasma urealytica  may be  Reiter’s syndrome
  • 79. Viral characteristics • Viruses are acellular* (require the cellular material from other organisms in order to replicate) = obligate intracellular parasites.* • A virus particle = virion consists of: 1. Viral genome (DNA or RNA) ‘capsomere’ refers to the morphological unit of viral genome 2. Capsid: protein shell [Capsids vary in shape: helical, cubid, or icosahedral] 3. Lipoprotein envelope surrounding capsid • Viruses vary in size from 10 to 300 nm in diameter • Viruses are classified according to: their constituent nucleic acid and morphology
  • 80. Viral characteristics • Bacteria & fungi are cellular • Viruses are acellular Virus release is by cell lysis or budding*
  • 81. Viral replication • Site of replication: the host nucleus or cytoplasm. • Stages of viral replication: 1. Adsorption: attachment of the virus particle to a cell by random collision, electrostatic attachment, or host cell receptors. 2. Penetration: by viropexis or fusion of the viral envelope and cell membrane. 3. Capsid removal: the capsid is removed by host cell enzymes. Inclusion bodies: Synthesized viral particles can sometimes be seen on light microscopy. They represent sites of viral synthesis or replication.
  • 82. Viral replication* 4. Nucleic acid replication: - Most DNA viruses replicate in the nucleus by host cell enzymes to make mRNA and to replicate DNA. [Pox virus is an exception]* - RNA viruses replicate in the cytoplasm.* RNA viruses are unable to borrow host cell enzymes because none exist for copying RNA from RNA. Use of reverse transcriptase to make DNA from an RNA template overcomes this. DNA virus will therefore produce intra-nuclear inclusion bodies. RNA virus will therefore produce intra-cytoplasmic inclusion bodies.
  • 83. Cytomegalovirus produces both cytoplasmic and nuclear inclusions. The nuclear inclusions are referred to as ‘owl’s eye’ inclusion bodies
  • 84. Viral transmission Vertical, horizontal, or BOTH • Vertical transmission: From mother to fetus e.g. CMV or rubella • Horizontal transmission: From one individual to another by: - Direct contact - Faeco-orally (e.g. enteroviruses) - Airborne-respiratory (e.g. paramyxoviruses) - Parenteral routes e.g. HBV, HCV, HIV or rabies.
  • 85. The cellular response to viral infection • Cytopathic effect = visible cellular effect of virus infection includes: Cell shrinking, rounding, inclusion bodies, and the formation of giant multi- nucleate cells  cell death due to cytolysis or inhibition of cell metabolism. • Chronic infection can result in: o Latency: the viral genome is integrated into the host DNA. It does not replicate until a trigger occurs, e.g. stress. A classic example of this is the HSV o Persistence: the virus replicates at a very low rate.* o Transformation: the virus initiates new cell properties  teratogenic change.
  • 86. The host response to viral infection • Inflammation and tissue damage can be due to: - The direct effects of the virus - The host response. • Innate immunity: - Barriers: (Cilia in the respiratory tract, acid in the stomach) can prevent viruses invading the epithelial surface - Fever: inhibits viral replication !! • Aquired immunity: antibody, complement, and interferon, and the cellular production of T and B lymphocytes, macrophages, and PMNL.
  • 87. Viral pathogenicity • Viruses enhance their pathogenicity through evasion of immune mechanisms, by: 1- Mutations: changes in their antigenic surface  prevent detection by immune cells. oAntigenic drift: minor changes in antigenicity due to point mutations in the viral genome. oAntigenic shift: major change in antigenicity 2- Viruses have the ability to avoid complement: Herpes simplex type 1 produces a C3b-binding molecule that facilitates degradation of the alternative pathway molecule C3bBb convertase. Viruses, unlike bacteria, do NOT have anti phagocytic coat*
  • 88. Diagnostic tests and serology* 1. Direct viral isolation: by electron microscopy [replaced by other tests] 2. Serological techniques for detection of antigen or antibody: complement fixation measures the reaction between viral antigen and a specific antibody, and gives a direct measure of the consumption of complement added. In a positive test the erythrocytes are not lysed by complement as it has already been bound by the antigen/antibody reaction. 3. ELISA 4. Radioimmunoassay (RIA) 5. Reverse passive haemagglutination e.g. detection of HBsAg
  • 89. Diagnostic tests and serology 6. Organism-specific humoral responses can be detected in ocular fluids: Goldmann and Witmer reported a method to calculate whether antimicrobial antibodies are being produced within tissues and hence demonstrating local infection 7. PCR Goldmann and Witmer coefficient (C) C = antibody titre in ocular fluid antibody titre in serum × total IgG in ocular fluid total IgG in serum C ≥ 3, local antibody production present
  • 90.
  • 91. Important ocular viral pathogens RNA virusesDNA viruses ParamyxovirusHerpes viruses • Herpes simplex • Varicella zoster • Cytomegalovirus • Epstein–Barr virus (EBV) TogavirusAdenovirus RetrovirusPapovavirus Pox virus
  • 92. Herpes viruses Double-stranded DNA viruses with an icosahedral capsid.* • Herpes simplex • Varicella zoster • Cytomegalovirus • Epstein–Barr virus (EBV) Members of the herpes virus family are the causative agents of acute retinal necrosis. HSV & HZV more common //// CMV & EBV more rare Adenovirus do NOT cause ARN DNA virus
  • 93. Herpes simplex virus Types: 1. HSV-1: most commonly associated with oral infection [Above waist] [rarely  Herpes gladitorum (scrumpox)]* 2. HSV-2: most commonly associated with genital infection [Below waist] Pathology: 1. 1ry infection: usually in childhood and is subclinical 2. 2ry (reactivation):  with: - Immunosuppression, malignancy, and with the use of topical steroid. - Hormonal changes, ultraviolet light, stress, and trauma. DNA virus
  • 94. • There are four stages in the life cycle of HSV-1 (Table 5.7): ?? ‫؟‬ ‫الجدول‬ 1. Entry into the host and replication at this peripheral site (e.g. eyes, skin, or mucosae). 2. Spread to the axonal terminals of sensory neurons followed by retrograde intra-axonal transport to neuronal cell bodies in sensory and autonomic ganglia. 3. Latency in ganglia, e.g. trigerminal ganglion. 4. Reactivation with the production in the ganglia of infectious virus transported anterogradedly to the periphery, with further replication at the site of primary infection. A culture or smear of the affected tissue shows intraepithelial vesicles and contains syncytial giant cells and eosinophilic intranuclear inclusions. DNA virus
  • 95. ??? Expression of viral genes changes throughout the life cycle. A viral structural protein known as VP16 enhances transcription of these genes: • Immediate–early (regulatory genes) • Early (viral DNA replication) • Late (structural proteins of the virus) DNA virus
  • 96. Effect of HSV on eye: - Conjunctivitis - Keratitis - Uveitis - Uveoretinitis. The viral envelope is highly immunogenic and stromal disease, e.g. disciform keratitis, is due to a hypersensitivity reaction to viral antigen rather than the virus itself. DNA virus
  • 97. Varicella zoster virus 1ry infection  chickenpox (vesicles on the trunk, face, and mouth). Reactivation  shingles [If reactivated in the trigeminal ganglion  HZO] N.B. About latency 1. Latency occurs: in certain ganglia, most commonly the trigeminal* followed by thoracic lumbar, and cervical nerve ganglia. 2. Cell-mediated* immunity maintains the virus in its latent state. Reactivation can be due to concurrent illness, immunosuppression, or radiotherapy. DNA virus
  • 98. Cytomegalovirus (CMV) Cytomegalovirus infection is very common, but it is subclinical in 80% of cases. • The virus is shed from the genital or urinary tracts and becomes latent in lymphocytes. • Reactivation can occur during pregnancy  asymptomatic infection of fetus. If the 1ry infection occurs in pregnancy (especially in 1st trimester)  congenital anomalies (= cytomegalic inclusion disease)  o Strabismus o Chorioretinitis o Microphthalmia o Hepatitis o Post-transfusion mononucleosis. DNA virus
  • 100. CMV infection in the immunosuppressed can lead to:  CMV retinitis  Transplant rejection  CMV pneumonia. DNA virus
  • 101. Cytomegalovirus produces both cytoplasmic and nuclear inclusions. The nuclear inclusions are referred to as ‘owl’s eye’ inclusion bodies DNA virus
  • 102. Epstein–Barr virus Cause: - Infectious mononucleosis = glandular fever. - Burkitt’s lymphoma (EBV can transform B lymphoblasts) - Nasopharyngeal carcinoma DNA virus
  • 103. N.B. Organisms can cause latency: - T.B. - HSV (latent in trigeminal ganglion) - HZV (latent in trigeminal ganglion or ……… ) - CMV (latent in lymphocyte) - Chalamydia
  • 104. 2. Adenovirus Double-stranded DNA viruses with icosahedral capsid without* an envelope. Transmission to eye: air-borne or direct contact with: - Ocular secretions - Contaminated instruments, eye drops - Hands of health professionals Serotypes: 47 • Serotypes 1, 2, 3, 5, 7, and 14 are associated with pharyngoconjunctival fever. • Serotypes 8, 19 & 37 are associated with epidemic keratoconjunctivitis. Adenovirus is highly prolific: a single infected cell can produce 10,000 virions per cycle of 30–36 hours.*
  • 105. 2. Adenovirus • Adenovirus has the ability to avoid immune defenses by: suppressing transcription and presentation of MHC Class I molecules on the infected cell surface.* Adenovirus can produce proteins that interact with p53 & the retinoblastoma gene  some strains have oncogenic properties in animal models.* DNA virus Adenovirus  adenoviral keratitis TTT: Acyclovir has NO role !!! Unknown TTT, but steroid  it Adenovirus  is cultured on HeLa cell line
  • 106. 3. Papovavirus Human papilloma virus Double-stranded DNA virus of which there are over 60 types. The DNA is arranged into a circular molecule with areas known as open reading frames. These are divided into early (E) and late (L) regions. E regions code for viral replication proteins. Effect of HPV: 1. HPV generally infects epithelial cells and some possess the ability to induce proliferation (benign papilloma). HPV 6 and HPV 11 are associated with benign conjunctival papillomata. DNA virus
  • 107. Human papilloma virus 2. Malignant change d.t insertion of a particular type of HPV DNA into the host genome. The E2 gene is an important regulator of HPV and disruption of this gene is found in all tumors that have HPV DNA integration. • Disruption of E2   production of E6 and E7. o E6 forms complexes with p53 (tumour-suppressor gene) and hence promotes oncogenesis. This is seen in HPV 16 and HPV 18. They cause conjunctival dysplasia and carcinoma. o E7 inactivates the gene product of the retinoblastoma tumour-suppressor gene. DNA virus
  • 108. 4. Pox virus DNA viruses that grow in the cytoplasm with very limited nuclear involvement. This is because they possess a DNA-dependent RNA polymerase, a transcript poly-A polymerase, a capping enzyme, and methylating enzymes can replicate independently of the host cell. DNA virus
  • 109. Pox virus Molluscum contagiosum The most common pox virus to cause ocular infection. It is commonly seen in children and is spread by direct contact or through contaminated fomites or water. Adult cases tend to be sexually transmitted. Effects: - Conjunctivitis - Pearly white or flesh-coloured lesions on the face, extremities, and trunk. - Epidermal hyperplasia is due to the production of a protein related to the conserved domain of epidermal growth factor. DNA virus Molluscum virion can be seen by light microscope !
  • 110.
  • 112. Paramyxovirus Measles C/P: prodroma of: cough, coryza, and conjunctivitis THEN fever* Complications: • 2ry bacterial respiratory infection • Encephalitis(1:1000 case)* • Subacute sclerosing panencephalitis (SSPE) (rare) , which can be associated with chorioretinitis and maculopathy RNA virus • Measles can cause death!!: by 2ry bacterial infection • Measles can cause blindness!!: by corneal scarring (which occur in patients with vitamin A deficiency)
  • 113. Paramyxovirus Mumps C/P: fever and parotitis Complications: - Orchitis and reduced fertility, pancreatitis, and meningo-encephalitis. - Ocular complications include dacryoadentitis and extraocular muscle palsies. RNA virus Recent infection characterized by  antibody titre to S antigen (Antibody to V antigen appear later but persists for years)
  • 114. Togavirus Rubella Rubella is subclinical in 80% of small children and 10% of adults. Incubation period: 2-3 weeks If a mother is infected in the 1st trimester of pregnancy  congenital rubella syndrome : - Miscarriage or stillbirth may occur. - Congenital defects For this reason a live attenuated vaccine is given to children under the age of 12 years. RNA virus
  • 115. Togavirus Rubella - Congenital defects include: • Eye: o Cataract o Microphthalmia o ‘Salt and pepper’ retinitis o Glaucoma • Ear: Neurosensory deafness • Heart: patent ductus arteriosus RNA virus NOT conductive deafness
  • 116. N.Bs • Rubella: maximal infectivity coincide with appearance of rash • Measles: maximal infectivity before appearance of rash • Live attenuated vaccines: o MMR (Measles – Mumps – Rubella) o Polio o Yellow fever RNA virus
  • 117. N.Bs • Measles & mumps do NOT cause congenital anomlaies • Infection that cause congenital anomalies: o Toxoplasmosis o Rubella o CMV – Chicken pox o Herpes - HIV o Syphilis o Listeria monocytogenes RNA virus TORCH S.L
  • 118. Retrovirus 1. Human T-cell lymphotrophic viruses (HTLVs) • They are associated with: - T-cell lymphomas, including cutaneous lymphomas (mycosis fungoides and Sézary syndrome) - Progressive myelopathy - Uveitis in some ethnic groups. RNA virus
  • 119. Retrovirus >> 1. Human T-cell lymphotrophic viruses (HTLVs) HTLV-1 - Endemic in Japan, the West Indies, and central Africa. - Transmitted vertically and horizontally through sexual contact or parenteral transmission and infects primarily CD4+ lymphocytes. - HTLV-1 replication is regulated by two unique genes known as tax and rex. Tax transactivates genes for IL-2 and IL-2 receptors, hence making clonal expansion independent of IL-2 autocrine activity !! RNA virus
  • 120. Retrovirus >> 2. Human immunodeficiency virus • HIV-1 and HIV-2 are retroviruses possessing the ability to infect CD4+ lymphocytes. They contain a single strand of RNA and reverse transcriptase. They differ in the structure of their glycoprotein envelopes. • The main genomic components of HIV include: – Structural genes: gag gene codes for p55, which is cleaved into p24, p18, and p15. The envelope gene codes for a glycoprotein enclosing the viral particle. This glycoprotein is cleaved to form two envelope proteins gp 4 and gp 120. – Regulatory genes: these act to stimulate viral transcription and cause proliferation of adjacent healthy cells, e.g. B cells and Kaposi’s sarcoma.RNA virus
  • 121. 2. Human immunodeficiency virus>> Immunological effects of HIV • HIV gains entry to CD4 lymphocytes via binding to CD4 antigen and CXC chemokine receptors on the cell surface. • It therefore makes sense that this virus can infect other cells such as monocytes and microglial cells expressing these receptors (Table 5.8). • Viral infection of CD4+ T cells leads to the formation of a multinucleate cell and cell death. The virus therefore dimin- ishes the cell-mediated immune response predisposing to viral, protozoan, and some neoplastic conditions. • HIV is known to cause polyclonal antibody produc- tion (hypergammaglobulinaemia) and the production of autoantibodies. • The body’s immune response against HIV is reduced because the latent virus is RNA virus
  • 122. 2. Human immunodeficiency virus Manifestation of HIV infection - Asymptomatic - Acute febrile illness during seroconversion - Persistent generalized lymphadenopathy. Seroconversion to anti-HIV antibody occurs 4–12 weeks after acute infection. RNA virus
  • 123. 2. Human immunodeficiency virus Tests for HIV infection include: 1. HIV culture: the virus is isolated by co-culture with normal lymphocytes in the presence of IL-2. Multiplication is detected by reverse transcriptase assay or HIV antigen expression in culture. 2. HIV antigen detection: the first detectable protein is actually p24 (core protein) at 2–3 weeks followed by the antibody response below. 3. HIV antibody detection: by ELISA or Western blotting. Western blots demonstrate both IgG and IgM antibodies against envelope and structural proteins coded for by the gag gene (p55). RNA HIV can be detected in body fluids. It is usually obtained from peripheral blood.
  • 124. 2. Human immunodeficiency virus 4. HIV nucleic acid: PCR can be used to amplify HIV genome RNA. After PCR, ELISA estimation detects as little as 50genome numbers per millilitre of blood. This can be used to estimate viral load. This can be used alongside CD4+T-cell count when monitoring response to treatment. A fall in CD4+ T-lymphocyte count and anti-p24 antibody titre with a rise in titre of core antigen can demonstrate a rise in viral load and can precede the onset of AIDs. RNA virus
  • 125. 2. Human immunodeficiency virus Progression to AIDS Epidemiological data show that there are three types of AIDS transmission: • Type 1: urban spread (USA and Europe) in homosexuals, heterosexuals, and intravenous drug users • Type 2: African spread, mainly heterosexual • Type 3: South-east Asia, yet to be fully defined. AIDS is defined as an illness characterized by one or more of the listed Communicable Disease Centre (CDC) indicator diseases depending upon the status of laboratory evidence of HIV infection. In addition to this the definition of AIDS also includes all HIV-positive patients with CD4+ counts of < 200 per μl. RNA virus
  • 126. 2. Human immunodeficiency virus • Some of the more common indicator diseases include: • Pneumocystis carinii pneumonia • Cytomegalovirus retinitis • Cryptococcus • 1ry lymphoma of the brain • Pulmonary tuberculosis (TB) • Invasive cervical carcinoma. Before the advent of anti-retroviral therapies, up to 25% of patients with AIDS presented with opportunistic ocular infection (Table 5.9). The most common of these is CMV retinitis. RNA virus
  • 127.
  • 128. 2. Human immunodeficiency virus Highly active antiretroviral therapy (HAART) HAART is used in the treatment of both AIDS and HIV HAART acts to increase CD4+ T-cell counts and restores antigen-specific responses. It involves the use of a combination of agents, including: Reverse transcriptase inhibitors, e.g. zidovudine—zidovudine is phosphorylated in both infected and uninfected cells by thymidine kinase. This phosphorylation produces zidovudine-TP, which acts to inhibit viral reverse transcriptase and also promotes RNA chain termination prematurely. RNA virus
  • 129. 2. Human immunodeficiency virus Proteinase inhibitors, e.g. indinavir—indinavir inhibits recombinant HIV-1 and HIV-2 proteinase and therefore prevents cleavage of viral precursor pro- teins producing immature non-infectious particles • Indinavir is used in combination with a nucleoside analogue. • Nucleoside analogues—chain terminators of HIV reverse transcriptase RNA virus
  • 130. ‫االميونيتي‬ ‫ف‬ ‫كان‬ ‫كالم‬ ‫حبة‬
  • 131. AIDS
  • 132. AIDS
  • 133. HIV‫لسه‬ HIV is a retrovirus that infects CD4+ T cells, DC, and macrophages  their destruction and a defective immune system. Sub-types: [There is a possibility of more HIV subtypes] - HIV-1 - HIV-2 Initial infection is characterized by an influenza-like illness, which is accompanied by a massive increase in viral load and a decrease in circulating CD4 cells. This is associated with the production of antibodies and is called seroconversion There then follows a clinically asymptomatic period, where numbers of CD4 + cells gradually reduce. Eventually patients have so few CD4 + T cells left that they are unable to mount reasonable responses and now have AIDS. This can take from 6 months to 20 years, but eventually will occur in all HIV sufferers.
  • 134. HIV The following are useful in diagnosis of HIV infection : • PCR • ELISA • P24 protein assay • Immunoglobulin assay • CD4:CD8 ratio #Chua
  • 135.
  • 136.
  • 138.
  • 139. Fungi • Fungi are eukaryotic organisms. • They contain both DNA and RNA, • They can reproduce sexually. • They are dependent on exogenous sources of food and are therefore either parasitic or saprophytic. [heterotrophs] • They are Gram-positive (Both yeasts and filamentous fungi)
  • 140. Fungi • Groups of fungi: 1. Yeasts: unicellular.* 2. Filamentous fungi (moulds): contain branching filaments “mycelium”. Mycelia absorb nutrients and produce reproductive spores.* 3. Dimorphic fungi (a mixture of both of the above)
  • 141. Fungi • Groups of fungi: 1. Yeasts:e.g. - Candida albicans - Cryptococcus neoformans 2. Filamentous fungi (moulds) :e.g. - Aspergillus fumigates - Mucoraceae - Actinomyces israelii 3. Dimorphic fungi e.g. Histoplasma capsulatum
  • 142. Detection of fungi 1. Microscopy and cyto-pathological: distinguishing morphology 2. Sabouraud’s medium (glucose-peptone agar, pH 5.6) is used to culture fungi. 3. Immunofluorescent techniques can be used to determine antibody titres for specific fungal infections. 4. PCR can be used to detect fungal DNA from the vitreous in posterior intraocular inflammation. Stains useful for identifying fungi - Gomori methenamine-silver (Black) - Haematoxylin and eosin (pink) - PAS (purple) Gram stain can NOT be used for fungal identification
  • 143. Fungi • Most fungi that cause orbital infections are normal commensals of the respiratory, gastrointestinal, and female genital tracts and can be found as part of the normal commensals of the conjunctival sac.
  • 144. Fungi • Factors predisposing to fungal disease in the eye: 1. Exogenous: • Local trauma: exogenous mycotic infection may follow a local corneal abrasion with vegetable matter, e.g. if a foreign body is present • Contact lens wear • Topical antibiotic and steroids 2. Endogenous: • Immunocompromised : haematogenous • Non-ketotic diabetic ketoacidosis from adjacent air sinuses • Contamination of indwelling catheters or intravenous lines
  • 145. Yeasts - Candida albicans • Oval unicellular fungus that can reproduce by budding OR mycelation* Candida albicans is a budding yeast form on Sabouraud’s glucose medium. If aeration is reduced mycelium or pseudomycelium can form. Candida is the most frequent cause of endogenous fungal endophthalmitis. • It is a normal commensal of the muco-cutaneous surfaces: gastrointestinal, genitourinary, and respiratory tracts. • Predisposing factor for candida infection: Diabetes mellitus, malignancy, liver disease, prolonged antibiotic therapy, alcoholism & intravenous drug use Contaminated indwelling venous catheter tips are the most common source of infection in these patients.
  • 146. Yeasts - Candida albicans • Culture: Sabouraud’s glucose media or blood agar. It forms dome-shaped creamy white colonies at 24–48 hours.
  • 147. Yeasts - Cryptococcus neoformans • It is a true pathogen • It is found in pigeon droppings. • Cause: “cryptococcosis” - Lung infections following inhalation. - If spread haematogenously  oMeningoencephalitis oChronic endophthalmitis Aspergillus is NOT true pathogen (it is opportunistic)
  • 148. Filamentous fungi - Aspergillus • Aspergilli are found in decomposing plant debris. • Their spores can  aspergillosis if inhaled. • Inhaled spores can germinate in the lumen of the bronchi  IgE-mediated allergic response (type I hypersensitivity) or Production of IgG antibodies and complement activation. (type II hypersensitivity) • Invasive aspergillosis is seen in immunocompromised patients. • Aspergilloma “mycetoma” refers to a mass of mycelia and is found in lung cavities after healed TB, bronchiectasis, or sarcoidosis.
  • 149.
  • 150. Filamentous fungi - Aspergillus • Aspergillus fumigatus is an opportunistic pathogen. It can cause: - Conjunctivitis - Keratitis - Endophthalmitis - Granulomatous orbital inflammation.
  • 151. Filamentous fungi - Mucoraceae • They are found in soil, air, ventilation systems, and the nose and pharynx. • Shape: broad, irregular non-septate hyphae that branch at right angles • Iron is an important growth factor for the Mucorales. • Stain best with Gomori methenamine-silver, haematoxylin and eosin, and PAS. Class: Zygomycetes Order: Mucorales Family: Mucoraceae
  • 152. Filamentous fungi - Mucoraceae • Inhaled spores are usually destroyed by macrophages but in an acidotic environment phagocytosis is compromised and infection can occur  mucormycosis. Mucormycosis ~ zygomycosis It can be caused by: Rhizopus, Mucor, and Absidia. Most commonly seen in: - Non-ketotic DKA (diabetic ketoacidosis) - Chronic illness e.g. metastatic neoplastic disease. C/P: orbital cellulitis  cerebrorhinoorbital syndrome, which can be fatal.
  • 153. Filamentous fungi - Actinomyces israelii NOW, it is known to be bacteria that mimic fungus See before
  • 154. Dimorphic fungi • The yeast form is found in infected tissues and can lead to intraocular inflammation, including: • Optic neuritis • Chorioretinitis • Panuveitis.
  • 155. Dimorphic fungi - Histoplasma capsulatum • Soil fungus that is endemic in the Mississippi delta. • Transmission: by inhalation of mycelial fragments and/or spores with dust particles  mild febrile illness or asymptomatic. Around 70% of people living in this area and the Ohio River valley have positive histoplasmin skin test reactivity.
  • 156. Dimorphic fungi - Histoplasma capsulatum Histoplasma capsulatum  Histoplasmosis ‫دلوقتي‬ ‫بس‬ ‫العين‬ ‫عن‬ ‫تاثيره‬ ‫عن‬ ‫هنتكلم‬ • The organism reaches the choroid by haematogenous spread.   - Active choroiditis is NOT common. - Presumed ocular histoplasmosis syndrome (POHS): is a multifocal choroiditis associated with the formation of subretinal neovascular membranes (CNV). It is thought to be immunologically mediated in individuals exposed to the fungus sensitive to amphotericin B and ketoconazole. • At 26°C POHS exists in a mycelia phase and at 37°C it is a yeast. Demonstration of this dimorphism is part of the necessary criteria for identification of H. capsulatum on brain–heart infusion agar.
  • 157. Presumed ocular histoplasmosis syndrome (POHS) Classic triad: 1. Multiple white atrophic chorioretinal ‘histo’ spots about 200 μm in diameter 2. Peripapillary atrophy 3. Vitritis is absent N.B. TTT: Anti VEGF for the CNV Antifungals (as amphotracin) are NOT benifical !!
  • 160. Chlamydiae • Chlamydiae are small bacteria without* a cell wall. • They are unable to grow on normal media and are obligate intracellular bacteria. • They grow well in McCoy cell culture media. • Chlamydiae contain both DNA and RNA, and require host-derived ATP to survive and replicate in the cytoplasm of the host cell. • They divide by binary fission. • The genus comprises three species: o Chlamydia trachomatis o Chlamydia psittaci o Chlamydia pneumonia.
  • 161. Chlamydia trachomatis • Chlamydia trachomatis is divided into serotypes by immune fluorescence tests • All are glycogen positive • All have humans as their host. • Different serotypes require different amino acids. • Serotypes include: o A–C: cause endemic trachoma and require tryptophan o D–K: cause adult inclusion conjunctivitis (sexually transmitted) o L1, 2, 3: cause lymphogranuloma venereum and require methionine. Chalmydia A-C serotypes do NOT cause ophthalmia neonaorum
  • 162. Chlamydia trachomatis Chlamydia trachomatis exists in two forms: • The elemental body = infectious form attaches to the host cell. It is enclosed in a cytoplasmic vesicle inside the host cell and is spared lysosomal degradation. • The reticulate body = replicative form This forms after 6–8 hours inside the host cell. It divides for around 24 hours and then returns to the elemental form.
  • 163.
  • 164. Chlamydia trachomatis • Diagnosis of chlamydia: 1. Giemsa staining of smears: basophilic intracytoplasmic inclusion bodies. 2. McCoy cells media culture 3. ELISA can be used to detect inclusions within 24 hours. 4. Antibody detection in the serum and tears can also be used and correlates well with clinical activity.
  • 165. Protozoa • Protozoa are unicellular eukaryotic parasites. • Humans can act as an intermediate host in their life cycle.
  • 166. Protozoa - Toxoplasma gondii • It is obligate intracellular parasite • Cat is the definitive host. • Intermediate host is human, rat or bird • Transmission: faeco-oral, ingestion of uncooked meats, inhalation OR transplacental. Cell-mediated immunity with activated macrophages is the prime defense against toxoplasma. Stages of infection: 1. Cell penetration: by primitive mouthpiece or conoid of the parasite, which contains lytic enzymes. 2. Inside the cell: it protects itself from lysosomal destruction using a vacuole
  • 167.
  • 168. Protozoa - Toxoplasma gondii Life cycle of toxoplasma • Merozoites  Gametocytes [occurs only in the cat intestinal epithelium] • Microgametes  oocysts [excreted in the faeces and spore in soil at 1–5 days] • Ingestion of eggs (sporozoites) by an intermediate host • Sporozoites divide rapidly and travel to the lymph nodes inside white blood cells. • Extraintestinal spread can be to skeletal muscle, heart, brain, and the eye. • Cysts enclose slowly dividing bradyzoites at these sites.
  • 169. Protozoa - Toxoplasma gondii Diagnosis: - PCR - Detection of local antibody ( by intraocular fluid samples) However, in the majority of adult ocular toxoplasmosis the diagnosis is clinical. Treatment: - pyrimethamine, sulphadiazine, or clindamycin + ? Ocular toxoplasmosis: steroid therapy may be added  to help resolution of intraocular inflammation.
  • 170. Protozoa - Toxoplasma gondii Clinical manifestations of toxoplasmosis • If mother is infected during 1st trimester  still birth, intracranial calcification, mental retardation, and chorioretinitis. • If mother is infected late in pregnancy  Asymptomatic retinal inflammation and cyst formation may occur with chorioretinitis • If infection acquired in childhood  meningoencephalitis. • If infection acquired in adulthood  febrile illness with features similar to infectious mononucleosis. Adult-acquired chorioretinitis can occur. Ocular toxoplasmosis presents as a single discrete lesion in the choroid/retina. • Recurrence presents as satellite lesions of the original scar.
  • 171.
  • 172. Protozoa - Acanthamoeba Found: in public water supplies, swimming pools, hot tubs, fresh water ponds, lakes, bottled mineral water, and soil. Can be cultured from nasopharynx of normal individuals Most common subtypes in acanthamoebic keratitis are: - A. castellani - A. polyphaga Cultured on: non-nutrient agar covered with killed E. coli
  • 173. Protozoa - Acanthamoeba Effect: • Indolent corneal ulceration (most commonly in soft contact lens wearers) Neovascularization occurs lately Firstly the amoeba attaches to the epithelial surface; an epithelial defect may assist in the adherence. Stromal changes are thought to occur due to collagenase activity.
  • 174. Protozoa - Acanthamoeba • Acanthamoeba species exist in two forms: 1. Active trophozoite 2. Dormant encysted form. Treatment: (long and may require more than one treatment): • Aminoglycosides (neomycin) • Diamidines (brolenes) These are active against trophozoites • Imidazoles.. • Antiseptic biocides e.g. polyhexamethylene biguanide (also active against cysts)
  • 175. Protozoa - Acanthamoeba H2O2 3% is used in disinfectant solution of contact lenses to kill acanthamoeba*
  • 177. Ocular helminth infections • Helminths are parasites; often the human is essential in order for the helminth to complete its life cycle. The immune response to helminth infection is harmful to the host. A helminth infection initiates antibody production and complement activation alongside a marked type I hypersensitivity reaction with an allergic IgE response, IgE-dependent degranulation of mast cells, and an eosinophilia. • Helminths are classified as follows: – Trematodes, e.g. Schistosoma – Cestodes, e.g. Taenia, Echinococcus – Nematodes, e.g. Toxocara, Filaria, Onchocerca, and Trichinella.
  • 178. Trematodes (flukes) Schistosomes Schistosomes are the only trematodes that can cause ocular disease. • Schistosomes are contracted from snails. The larvae known as cercariae penetrate the skin and lymphatics. Immature worms enter the lungs and mature here before spreading haematogenously. At this stage the schistosomes can cause a granulomatous reaction in the ocular adnexae and/or subconjunctivally.
  • 179. Cestodes Taenia solium • Taenia can be ingested from pork. The ingested larvae mature in the intestine and reproduce. They cross the mucosa and can spread haematogenously to the retina, causing chronic inflammation and fibrosis. This can lead to retinal detachment. Echinococcus granulosus • This can cause hydatid disease and tends to be found in sheep-farming communities. Humans are infected through ingestion of ova from infected dog faeces. Larvae pass most commonly to the liver to produce hydatid cysts. Ocular involvement can occur in the orbit, leading to proptosis.
  • 180. Nematodes (round worms) Toxocara canis (dogs) and Toxocara cati (cats) • The natural hosts are dogs and cats. Humans are an accidental host and are not necessary for completion of the life cycle. • Toxocara canis is endemic in dog populations. Adult dogs and humans are infected by ingestion of infective ova from soil or by ingesting uncooked meat with larvae. • First- and second-stage larvae remain within the eggshell. Third-stage larvae are released into the intestine when the eggshell ruptures. They migrate via the lymphatics to the blood. Haematogenous spread to lung, liver, brain, and eye can occur.
  • 181. • The larvae encyst in the end organ. The majority remain dormant here. In pregnant bitches the larvae are activated and can migrate transplacentally to puppies. Puppies and lactating bitches are the main source of infective ova. Ova remain infective for several months and are able to survive extremes of temperature (–25–35°C). • Toxocara canis causes a chorioretinitis and uveitis. • Specific IgM antibodies can be detected in the acute phase of the infection. Serological tests can be negative and antibodies may be picked up in vitreous or aqueous samples. Treatment is with oral thiabendazole or albendazole with or without steroid.
  • 182. Nematodes - Filaria Filarial nematodes tend to be thread-like in appearance. They promote a specific IgG response and a marked IgE response & eosinophilia Immunity is directed towards the microfilarial stage or first-stage larvae
  • 183. Nematodes – Onchocerciasis (River blindness) Causative agent: Onchocerca volvulus and affects 30 million people worldwide. It is endemic in West and Central Africa – Yemen – south America Onchocerciasis is the most frequent helminthic ophthalmic infection.* • Humans is the definitive host. • Black fly (of Simulium type) are the intermediate host (contracting microfilaria from the human) Microfilaria mature to infective larvae in the black fly and when the black fly bites a human the larvae are transferred into the skin. Here they mature for around 1 year.
  • 184.
  • 185. Nematodes - Onchocerciasis Clinical picture: Diagnosis: skin patch test Prevention: Black fly eradication with DDT spraying of river basins Treatment: ivermectin against microfilaria [Moxidectin is a newer &superior] Eye “reach eye through blood”?Skin • Keratitis  Corneal scarring • Anterior uveitis • Optic neuritis • Chorio-retinitis • Intense itching • Skin papule • Skin atrophy • Depigmentation Mazzotti reaction: symptom complex seen in patients after undergoing treatment of onchocerciasis with the medication di-ethyl-carbamazine as dead or dying microfilarias cause an inflammatory response
  • 186. Quiz
  • 187. Quiz
  • 188. Nematodes - Loa Loa Loa Loa is transmitted by the deer fly. • Confined to central/west Africa • It can infect the eye in the microfilarial stage and mature to an adult worm subconjunctivally or subcutaneously. • In addition it can cause a uveitis or subretinal lesions • High eosinophilia • TTT: Di-ethyl-carbamazine
  • 189. Nematodes - Trichinella spiralis Human infection can occur due to ingestion of undercooked meat. - Larvae are able to infect extraocular muscles  Painful granulomatous reaction and inflammatory myositis. - Intraocular spread can occur  retinal haemorrhages, subretinal lesions, and papilloedema.
  • 190. Endophthalmitis This can cause endophthalmitis after cataract surgery: - Staph  - Strept  - Nisseria  - Candida  - Bacillus 
  • 191. Corneal ulcer This can cause corneal ulcer: - Staph  - Pseudomonas  - Moraxella  - Klebsiella  - Serratia marcscene  - Bacillus brevis 
  • 192. Neuro-reinitis is caused by: - Cat scratch - Lyme - CMV - Toxoplasmosis -Toxocariasis - Coasakie - $ - HSV - Infectious mononucleosis - Parvovirus - HBV

Editor's Notes

  1. $
  2. Plasmid is RNA (wrong) Both Flagella & pilli are for motility (wrong) Mesosomes are found in the cytoplasm (true)
  3. respiration (usually dependent upon cytochrome with COz and H20 as end products fermentation (hydrogen is transferred to an organic compound with pyruvic or lactic end products)
  4. $حطيت مونوكير بنفسجي ويود .... وشلته بالاسيتون
  5. $حطيت مونوكير بنفسجي ويود .... وشلته بالاسيتون Counterstaining with strong carbol-fuchsin (wrong)
  6. حطيت كاربول وسخنت وشلت بجكول
  7. Desoxycholate-citrate agar is a ―selective medium. (true)
  8. #ferris
  9. $ + / exotoxin / exo // Toxoid Remember: 150,000 kda = weight of IgG $ negative - endo
  10. $ + / exotoxin / exo // Toxoid Protein - potent #Ferris: Exotoxin has a specific pharmacological action (true) Remember: 150,000 kda = weight of IgG
  11. $ negative – endo #Ferris: endotoxin in all G –ve bacteria (true)
  12. $ negative – endo #Ferris: endotoxin in all G –ve bacteria (true)
  13. Also: corynebcaerium – micrococcus Nocardia is NOT commensal
  14. Small arthropode (mites or ticks)
  15. MCQ
  16. #chua Staph family is micrococcae #ferris: Staph grow on simple media (true) #chua: phage type I & II most common cause of boil (true) $ aureus – coagulase +ve
  17. $ aureus – coagulase +ve
  18. For me
  19. $ ABC
  20. Mycelium is the vegetative part of a fungus, consisting of a mass of branching, thread-like hyphae
  21. Mycelium is the vegetative part of a fungus, consisting of a mass of branching, thread-like hyphae
  22. $ Gornorrhea = tetsayyar martin chochlate !!
  23. #MCQs $ Meningiides – Maltose +ve
  24. ?? مش هوه جررام نيجاتيف ؟؟ ازاي بنسلين
  25. Do NOT cause srystalline keraopathy (sterpt do) ?? اتاكد
  26. $ Mac Donald اكل Mac-Conkey agar – Entero بطن
  27. Some opportunistic & other are pathogens >>>> #For me
  28. Deer غزالة
  29. Deer غزالة
  30. +ve witihin 3-7 weeks ( اعتقد قصده انه بيشخص بعد الاصابة ب كدا
  31. mollis (meaning "soft" or "pliable"), and cutis (meaning "skin")
  32. $ TORCHS infection : Toxoplasma – Rublla – CMV – Herpes – Syphilis – Others as ??
  33. Persistence: the virus replicates at no replication (wrong)
  34. Fever: inhibits viral replication !!?? WHY HSV come with fever ????
  35. EVASION: مراوغة
  36. $ DNA viruses >>> HAPPy 
  37. HZO = Herpes zoster opthalmicus
  38. #for me Cytomegalic inclusion body disease is the most common cause of congenital abnormalities in the United States !!! Congenital >> affect also CNS – Lung – Heart – kidney – liver – Ear > deafness
  39. # For me: 19 documented serotypes cause epidemic keratoconjunctivitis (EKC). The most commonly associated serotypes include adenovirus 8, 19, and 37, and, less frequently, serotypes 2-5, 7, 9, 10, 11, 14, 16, 21, and 29.  #FOR ME: PCF most frequently is caused by adenovirus serotypes 3 and 7, but serotypes 2, 4, and 14 also have been documented as etiologic agents. In addition, sporadic outbreaks caused by serotypes 1, 5, 6, 8, 11, and 19 have been reported.
  40. $ Measle جوه Mumps بره العين #for me: Vitamin A deficiency is a recognised risk factor for severe measles.  Vitamin A is used during TTT of measles
  41. $ Measle جوه Mumps بره العين
  42. seroconversion is when a specific antibody becomes detectable in the blood, and the corresponding antigen becomes undetectable [Seroconversion is the point in time when theamount of antibody in the blood exceeds the amount of antigen, and the antibody becomes detectable. Before seroconversion, the antigen is detectable, but the antibody is not]
  43. #chua in AIDS #الخلاصة .. المناعة واقعه كلها Persistent lymphopenia Decreased gamma IFN production in response to Ag Decreased IL2 production Impaired delayed hypersenstivtiy Absolute depletion of CD4
  44. #MCQs
  45. Saprophyte = lives on dead or decaying organic matter. Unlike more advanced plants, fungi lack chlorophyll and so can only grow as saprophytes (from dead plants or animals); or as parasites (on living plants); or in a mycorrhizal relationship (symbiosis between fungi and the roots of trees)
  46. $ خميرة – خيط – خميرة خيط
  47. $ خميرة – خيط – خميرة خيط
  48. $ فطروا وصبروا 
  49. $خميرة بيضا - حمامة بيضا
  50. $خميرة بيضا - حمامة بيضا
  51. حمامة بيضا
  52. Non-ketotic DKA ?????? Ezzay ya3ny
  53. Why it is called “presumed” ???? Despite its name, the relationship to Histoplasma is controversial
  54. Presumed ocular histoplasmosis syndrome (POHS)
  55. Must grow in eukaryotics = Do NOT contain mumric acid in cell wall
  56. NO intraocular calcification in toxoplasmosis
  57. $ bradyzoite - Slow
  58. القلعة المفجوعة
  59. #remember: pseudomonas is the most common infection related to contact lens (True)
  60. NOT only in Africa
  61. #chua: reach eye by subcutaneous migration
  62. #Chua  False
  63. #Chua  False
  64. #Chua