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November 14, 2014 | Las Vegas, NV 
Jason Stowe, Cycle Computing 
Patrick Saris, USC 
David Hinz, HGST
BETTER ANSWERS FASTER 
2
We believe access to Cloud Cluster Computing accelerates invention & discovery
Cluster Computing is Everywhere 
•Strategic Answers 
•Speed & Agility 
4
Jevons Paradox 
•UK in the 1860’s: “we need a fixed amount of steam power” 
•People thought: 
More efficient coal use = use less coal 
•Jevons disagreed!
Jevons Paradox 
•Jevons was contrarian: 
Increasing efficiency in turning coal to steam, making the interface simpler to consume, radically increases demand.
Cloud helps capacity… 
Fixed clusters are: 
Too small when needed most, 
Too large every other time… 
But this work is hard to move: data scheduling, encryption, multi-AZ, security, etc. 
Cycle powers access at scale
Internal: 
500 Servers, 
100% Full 
Data Workflow 
Cloud Orchestration 
Drug Designer 
Cycle solutions help access 
Cluster Container 
40 years of drug design in 9 hours 
3 new compounds, $4,372 in Spot 
10,600 
Servers 
Molecule 
Data 
Molecule 
Data 
Burst
Thanks to cloud, people can: Ask the right questionsGet better answers, faster
Record Scale, Enterprise Speed 
•Very innovative work by: 
–Patrick Saris, USC 
–David Hinz, HGST 
•Both will show the importance of: 
–Asking the right question, regardless of scale 
–Getting results faster to increase throughput
November 14, 2014 | Las Vegas, NV 
Patrick Saris, University of Southern California
Biomass 
5.6% 
Hydroelectric 
3.1% 
Wind 
2.0% 
Solar: 0.4% 
Geothermal 
0.3% 
Fossil Fuels: 79% 
Nuclear: 10% 
Source: U.S. Energy Information Administration, Monthly Energy Review –Table 1.2 
Renewables: 11%
+ 
Donor 
Acceptor 
- 
V
+ 
Donor 
Acceptor 
- 
V
Chlorophyl Indigo 
Graphite 
fragments
0 
5 
10 
15 
20 
25 
0 
5 
10 
15 
20 
25 
Experiment 
0 
5 
10 
15 
20 
25 
0 
10 
20 
Calculation 
Experiment
Chlorophyl Indigo 
Graphite 
fragments
nitrogens
-3.66 eV 
-2.65 eV 
1 
2 
3 
4 
Mat Halls, Schrodinger Inc.
nitrogen 
3,473
phenyl 
3,473 
553,855
+ 
Donor 
Acceptor 
- 
V
‘Band gap’ of parent structure
Production Cycle Deployment 
First live deployment 2008 
File System (PBs) 
If an internal cluster 
Exists. 
Jobs & data 
Blob data 
(S3) 
Cloud Filer 
Glacier 
Auto-scaling 
external 
environment 
HPC 
Cluster 
Internal HPC 
Blob data 
(S3) 
Cloud Filer 
Glacier 
Auto-scaling 
external 
environment 
HPC 
Blob data Cluster 
Cloud Filer 
Cold Storage 
Auto-scaling 
external 
environment 
HPC 
Cluster 
Scheduled 
Data
Metric 
Count 
Compute Hours of Work 
2,312,959 hours 
Compute Days of Work 
96,373 days 
Compute Years of Work 
264 years 
Molecule Count 
205,000 materials 
Run Time 
< 18 hours 
Max Scale (cores) 
156,314 cores across 8 regions 
Max Scale (instances) 
16,788 instances
How did we do this? 
Auto-scaling 
Execute Nodes 
JUPITER 
Distributed 
Queue 
Data 
Automated in 8 Cloud Regions, 
4 continents, Double resiliency 
… 
14 nodes controlling 16,788
© 2014 HGST, INC. 
David HinzGlobal Director, IS&T Cloud and DataCenterComputing Solutions 
Cost Effective High Performance Computing On Amazon Web Services
© 2014 HGST, INC. | HGST CONFIDENTIAL 48 
Agenda 
•Who is HGST and how is HPC used? 
•HGST’s AWS HPC Journey 
•Use of Cloudability for Cost Analysis and RI Planning 
•What’s Next
© 2014 HGST, INC. | HGST CONFIDENTIAL 49 
Capacity Enterprise 
Performance Enterprise 
Cloud & Datacenter 
Enterprise SSD 
(+3 acquisitions in 2013) 
7200 RPM & 
CoolSpin 
HDDs 
Ultrastar® 
Ultrastar® & 
MegaScale DC™ 
10K & 15K 
HDDs 
PCIe 
SAS 
HGST History 
 Founded in 2003 through the combination of the hard drive 
businesses of IBM, the inventor of the hard drive, and 
Hitachi, Ltd (“Hitachi”) 
 Acquired by Western Digital in 2012 
 More than 4,200 active worldwide patents 
 Headquartered in San Jose, California 
 Approximately 42,000 employees worldwide 
 Develops innovative, advanced hard disk drives (HDD), 
enterprise-class solid state drives (SSD), external storage 
solutions and services 
 Delivers intelligent storage devices that tightly integrate 
hardware and software to maximize solution performance 
Ultrastar He6 
with HelioSeal™ technology
© 2014 HGST, INC. | HGST CONFIDENTIAL 50 
HPC Modeling and Simulation: 
HGST’s Innovation Engine 
• Improved Mechanical Innovation 
- Internal/External Mechanical Structural Analysis of HDD 
- Critical Lubricant Attributes and Physics 
- Airflow / He inside HDD 
- Optimal combination of HDD head and media 
compositions, spindle design, lubricants 
- Storage Array: HDD location, airflow investigations 
• Faster Aerial Density Improvements 
- Micro magnetic analysis for Heat Assisted Magnetic Recording (HAMR) 
- Head-Medium Spacing (HMS) 
Magnetic Medium 
Magnetic Head Sensors 
Magnetic Spacing 
Trailing Edge 
of Slider 
HPC Doing The “Physics Work” Driving HGST Innovation
© 2014 HGST, INC. | HGST CONFIDENTIAL 51 
HGST’s HPC AWS Evolution 
• Stage 1 : PoC 
- First HPC PoC: Sept 2013 
• Stage 2 : Small Start 
- 1st HPC Production Cluster: Nov 2013 
• Stage 3 : Optimize Workloads And Flexibility 
- AWS C3 Deployments Jan 2014 
- 4th HPC Production Cluster: June 2014 
• Stage 4 : Lower Cost 
- Use Spot And Reserved Instances: Oct / Nov / Dec 2014 
• Stage 5 : Business metrics 
- Utilization and cost reports to HGST engineers : Dec 2014
© 2014 HGST, INC. | HGST CONFIDENTIAL 52 
Stage 1 + 2 + 3: Shape and Scale ComputeFluid Dynamics1.4x Overall Throughput GainMicroMagneticsMolecular Dynamics 
ParameterSweeps 
ThroughputGain 
Model 1 
1.23x -1.78x 
Model 2 
1.01x –1.67x 
Model 3 
1.23x–1.69x 
Model 4 
Up to 2.7x 
Simulation Type 
Throughput Increase 
HeadDrive Interface Vacuum Gaps 
1.99x 
Vacuum Gap "collection" 
4.00x 
Media Grains for HAMR (FePt/C) 
2.03x 
4 Carbon Molecule Clusters 
5.67xMolecular Dynamics 1.67x Initial Overall Throughput Gain
© 2014 HGST, INC. | HGST CONFIDENTIAL 53 
Stage 3: Optimize For Workload Flexibility 
Not all workloads and work require same compute resources 24 x 7 x 365
© 2014 HGST, INC. | HGST CONFIDENTIAL 54 
Stage 4: Spot Instances For Advanced HDD Research 
EBS 
Submit jobs, 
orchestrate HPC 
clusters over VPN 
Simulated 22 advanced 
head designs across 3 
materials possibilities 
= 15 compute years 
Used AWS c3 instances 
6x faster run-time: 
Ran in 5 days, not 30! 
Total cost: 
$4,026.02 
New Drive 
Head 
Design 
Workloads 
Encrypt, route data to 
AWS, return results 
HPC Cluster 
1024 Cores 
Of Spot 
Instances
© 2014 HGST, INC. | HGST CONFIDENTIAL 55 
EBS 
Submit jobs, orchestrate 
HPC clusters over VPC 
Run 1 Million drive head 
designs = 70.75 core-years 
90x throughput: 
Ran in 8 hours, not 30 days! 
3 days from idea to running! 
70,908 cores, 729 TFLOPS 
c3, r3 with Intel IvyBridge 
Cost: $5,594, Spot 
Instances 
New Drive 
Head 
Design 
Workloads 
World’s Largest F500 Cloud Run 
Transforming drive design to store the world’s data 
Encrypt, route data to 
AWS, return results 
Cluster with 
70,908 Cores 
Of Spot 
Instances
© 2014 HGST, INC. | HGST CONFIDENTIAL 56 
Stage 4 + 5: Optimize For Utilization and Cost 
Great Solutions Are Available To Ease Optimization Effort
© 2014 HGST, INC. | HGST CONFIDENTIAL 57 
Summary 
•HGST’s HPC AWS Journey ~15 months 
•Take The Right Steps Along The Journey To the Cloud 
•Pick The Right Partners and Tools For Success 
•Continually Evaluate Environment and Needs
© 2013 HGST, INC. | HGST CONFIDENTIAL 58 
Thank You
Take advantage of efficiency 
•Find more uses for this efficient, inexpensive compute 
Please ask the right questions, get answers quickly 
Go invent and discover!
THANK YOU 
60

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(BDT311) MegaRun: Behind the 156,000 Core HPC Run on AWS and Experience of On-demand Clusters for Manufacturing Production Workloads | AWS re:Invent 2014

  • 1. November 14, 2014 | Las Vegas, NV Jason Stowe, Cycle Computing Patrick Saris, USC David Hinz, HGST
  • 3. We believe access to Cloud Cluster Computing accelerates invention & discovery
  • 4. Cluster Computing is Everywhere •Strategic Answers •Speed & Agility 4
  • 5. Jevons Paradox •UK in the 1860’s: “we need a fixed amount of steam power” •People thought: More efficient coal use = use less coal •Jevons disagreed!
  • 6. Jevons Paradox •Jevons was contrarian: Increasing efficiency in turning coal to steam, making the interface simpler to consume, radically increases demand.
  • 7. Cloud helps capacity… Fixed clusters are: Too small when needed most, Too large every other time… But this work is hard to move: data scheduling, encryption, multi-AZ, security, etc. Cycle powers access at scale
  • 8. Internal: 500 Servers, 100% Full Data Workflow Cloud Orchestration Drug Designer Cycle solutions help access Cluster Container 40 years of drug design in 9 hours 3 new compounds, $4,372 in Spot 10,600 Servers Molecule Data Molecule Data Burst
  • 9. Thanks to cloud, people can: Ask the right questionsGet better answers, faster
  • 10. Record Scale, Enterprise Speed •Very innovative work by: –Patrick Saris, USC –David Hinz, HGST •Both will show the importance of: –Asking the right question, regardless of scale –Getting results faster to increase throughput
  • 11. November 14, 2014 | Las Vegas, NV Patrick Saris, University of Southern California
  • 12. Biomass 5.6% Hydroelectric 3.1% Wind 2.0% Solar: 0.4% Geothermal 0.3% Fossil Fuels: 79% Nuclear: 10% Source: U.S. Energy Information Administration, Monthly Energy Review –Table 1.2 Renewables: 11%
  • 13.
  • 17.
  • 18. 0 5 10 15 20 25 0 5 10 15 20 25 Experiment 0 5 10 15 20 25 0 10 20 Calculation Experiment
  • 21. -3.66 eV -2.65 eV 1 2 3 4 Mat Halls, Schrodinger Inc.
  • 22.
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  • 30. ‘Band gap’ of parent structure
  • 31.
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  • 41. Production Cycle Deployment First live deployment 2008 File System (PBs) If an internal cluster Exists. Jobs & data Blob data (S3) Cloud Filer Glacier Auto-scaling external environment HPC Cluster Internal HPC Blob data (S3) Cloud Filer Glacier Auto-scaling external environment HPC Blob data Cluster Cloud Filer Cold Storage Auto-scaling external environment HPC Cluster Scheduled Data
  • 42. Metric Count Compute Hours of Work 2,312,959 hours Compute Days of Work 96,373 days Compute Years of Work 264 years Molecule Count 205,000 materials Run Time < 18 hours Max Scale (cores) 156,314 cores across 8 regions Max Scale (instances) 16,788 instances
  • 43. How did we do this? Auto-scaling Execute Nodes JUPITER Distributed Queue Data Automated in 8 Cloud Regions, 4 continents, Double resiliency … 14 nodes controlling 16,788
  • 44.
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  • 47. © 2014 HGST, INC. David HinzGlobal Director, IS&T Cloud and DataCenterComputing Solutions Cost Effective High Performance Computing On Amazon Web Services
  • 48. © 2014 HGST, INC. | HGST CONFIDENTIAL 48 Agenda •Who is HGST and how is HPC used? •HGST’s AWS HPC Journey •Use of Cloudability for Cost Analysis and RI Planning •What’s Next
  • 49. © 2014 HGST, INC. | HGST CONFIDENTIAL 49 Capacity Enterprise Performance Enterprise Cloud & Datacenter Enterprise SSD (+3 acquisitions in 2013) 7200 RPM & CoolSpin HDDs Ultrastar® Ultrastar® & MegaScale DC™ 10K & 15K HDDs PCIe SAS HGST History  Founded in 2003 through the combination of the hard drive businesses of IBM, the inventor of the hard drive, and Hitachi, Ltd (“Hitachi”)  Acquired by Western Digital in 2012  More than 4,200 active worldwide patents  Headquartered in San Jose, California  Approximately 42,000 employees worldwide  Develops innovative, advanced hard disk drives (HDD), enterprise-class solid state drives (SSD), external storage solutions and services  Delivers intelligent storage devices that tightly integrate hardware and software to maximize solution performance Ultrastar He6 with HelioSeal™ technology
  • 50. © 2014 HGST, INC. | HGST CONFIDENTIAL 50 HPC Modeling and Simulation: HGST’s Innovation Engine • Improved Mechanical Innovation - Internal/External Mechanical Structural Analysis of HDD - Critical Lubricant Attributes and Physics - Airflow / He inside HDD - Optimal combination of HDD head and media compositions, spindle design, lubricants - Storage Array: HDD location, airflow investigations • Faster Aerial Density Improvements - Micro magnetic analysis for Heat Assisted Magnetic Recording (HAMR) - Head-Medium Spacing (HMS) Magnetic Medium Magnetic Head Sensors Magnetic Spacing Trailing Edge of Slider HPC Doing The “Physics Work” Driving HGST Innovation
  • 51. © 2014 HGST, INC. | HGST CONFIDENTIAL 51 HGST’s HPC AWS Evolution • Stage 1 : PoC - First HPC PoC: Sept 2013 • Stage 2 : Small Start - 1st HPC Production Cluster: Nov 2013 • Stage 3 : Optimize Workloads And Flexibility - AWS C3 Deployments Jan 2014 - 4th HPC Production Cluster: June 2014 • Stage 4 : Lower Cost - Use Spot And Reserved Instances: Oct / Nov / Dec 2014 • Stage 5 : Business metrics - Utilization and cost reports to HGST engineers : Dec 2014
  • 52. © 2014 HGST, INC. | HGST CONFIDENTIAL 52 Stage 1 + 2 + 3: Shape and Scale ComputeFluid Dynamics1.4x Overall Throughput GainMicroMagneticsMolecular Dynamics ParameterSweeps ThroughputGain Model 1 1.23x -1.78x Model 2 1.01x –1.67x Model 3 1.23x–1.69x Model 4 Up to 2.7x Simulation Type Throughput Increase HeadDrive Interface Vacuum Gaps 1.99x Vacuum Gap "collection" 4.00x Media Grains for HAMR (FePt/C) 2.03x 4 Carbon Molecule Clusters 5.67xMolecular Dynamics 1.67x Initial Overall Throughput Gain
  • 53. © 2014 HGST, INC. | HGST CONFIDENTIAL 53 Stage 3: Optimize For Workload Flexibility Not all workloads and work require same compute resources 24 x 7 x 365
  • 54. © 2014 HGST, INC. | HGST CONFIDENTIAL 54 Stage 4: Spot Instances For Advanced HDD Research EBS Submit jobs, orchestrate HPC clusters over VPN Simulated 22 advanced head designs across 3 materials possibilities = 15 compute years Used AWS c3 instances 6x faster run-time: Ran in 5 days, not 30! Total cost: $4,026.02 New Drive Head Design Workloads Encrypt, route data to AWS, return results HPC Cluster 1024 Cores Of Spot Instances
  • 55. © 2014 HGST, INC. | HGST CONFIDENTIAL 55 EBS Submit jobs, orchestrate HPC clusters over VPC Run 1 Million drive head designs = 70.75 core-years 90x throughput: Ran in 8 hours, not 30 days! 3 days from idea to running! 70,908 cores, 729 TFLOPS c3, r3 with Intel IvyBridge Cost: $5,594, Spot Instances New Drive Head Design Workloads World’s Largest F500 Cloud Run Transforming drive design to store the world’s data Encrypt, route data to AWS, return results Cluster with 70,908 Cores Of Spot Instances
  • 56. © 2014 HGST, INC. | HGST CONFIDENTIAL 56 Stage 4 + 5: Optimize For Utilization and Cost Great Solutions Are Available To Ease Optimization Effort
  • 57. © 2014 HGST, INC. | HGST CONFIDENTIAL 57 Summary •HGST’s HPC AWS Journey ~15 months •Take The Right Steps Along The Journey To the Cloud •Pick The Right Partners and Tools For Success •Continually Evaluate Environment and Needs
  • 58. © 2013 HGST, INC. | HGST CONFIDENTIAL 58 Thank You
  • 59. Take advantage of efficiency •Find more uses for this efficient, inexpensive compute Please ask the right questions, get answers quickly Go invent and discover!