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AFB &SELECTED GRAM POSITIVES BLS 206
GENUS: MYCOBACTERIUM Classification –  -Family Mycobacteriaceae -1 genus of medical importence = Mycobacteria -All are slow growing -All are acid-fast and contain large amounts of lipids intheir cell walls -Tubercle bacilli = M. tuberculosis, M. africanum, andM. bovis
[object Object]
The Mycobacteria are divided into 4 groups (Runyon groups) based on growth rate and pigmentation:Photochromagens: 	- are non-pigmented when grown in the dark.  - produce photoactivated pigments upon exposure to light e.gM. kansasii, M. marinum, M. asiaticum, M. simiae
2.Scotochromogens:  -Produce deep yellow to orange pigments when grown in light or dark, - The color deepens upon two weeks exposure to light e.gM. gordonae, M. scrofulaceum, M. szulgai, M. xenopi. 3. Nonphotochromogens: -May produce pigment ranging from white to yellow,  -The  pigment does not intensify upon exposure to light.e.g. M. tuberculosis. M. avium, M. intracellulare, M. terrae, M. ulcerans. 4. Rapid growers: - organisms that form colonies within seven days.eg. M.phlei, M. smegamtis, M. fortuitum, M. chelonei.
Morphology and cultural characteristics ,[object Object]
Acid fast
Complex cell wall lipids	– include mycolic acids 	– protects vs. phagolysosomal components ,[object Object],	– acid-fastness NB: Always work under biosafety cabinet!
[object Object]
 Several  acid fast stains that may be used:1. Ziehl-Neelsen: -uses heat to get the primary stain of carbolfuchsin to penetrate the cell wall; - acid alcohol destaining;  - methylene blue as the counterstain.
2. Kinyon:  – Uses a higher content of phenol (organic solvent) in the carbolfuchsin primary stain to allow penetration of the stain without the need to apply heat.  ,[object Object]
ethylene blue as the counterstain.,[object Object]
Acid-fast bacilli
[object Object]
Most grow on simple media.
For primary isolation complex media should be used – Use of a nonselective, a selective and possibly a liquid media is recommended. Nonselective  -May be egg or agar based.  - May include malachite green to suppress growth of contaminating bacteria. Lowenstein-Jensen  -egg based;   	-Colonies grow in 18-24 days. b. 	Middlebrook 7H10 and 7H11  – agar based;  	- colonies grow in 12-14 days.
2. Selective media:  – Consists of one of the nonselective media plus added antimicrobial agents (malachite green, cyclohexamide, and nalidixic acid are often used) -The colonies of M. tuberculosis on the solid media are rough, dry, granular, nonpigmented to buff colored colonies. 3. Liquid media:  - Media usually contains tween 80 and albumin and the organisms will grow faster than on solid media NB: Most Mycobacteria grow best in 5-10% CO2 and at 35-370 C.
Identification ,[object Object]
Pigmentation and photoreactivity
Further biochemical testing includes:Niacin reduction  -M. tb. Is nitrate reduction+ and – for catalase at 680 C  	2. Tween hydrolysis,  3. Arylsulfatase production,  4. Tellurite reduction, 					5. Salt tolerance, and  6. Pyrazinamidase production
M. tuberculosis culture
Virulence factors.  ,[object Object],– A glycolipid, trehalose 6,6’ dimycolate  responsible for the serpentine growth (filaments or cords) of M. tb. in which the bacilli grow in close parallel arrangement.   -Is toxic to leukocytes,  ,[object Object]
interfees with mitochondrial function in mice and
plays a role in the development of granulomatous lesions
Iron capturing ability – required for survival inside phagocytes
Sulfolipids  prevent phgosome-lysosome fusion so that the organisms are not exposed to lysosomal enzymes (important in intracellular survival),[object Object]
In cattle- pulmonary d’se with involvement of associated lymph nodes.
Viscera and bone infections- occur in human
Chickens- resistant.
Rabbits, mice and guinea pigs more susceptible.,[object Object]
Other birds-Yes
Not all infected chickens show gross lesions.
Water fowls – resistant
In swine- disease found in lymph nodes of the head.
Cattle refractory but sensitized
Sporadic cases in horses, dogs and cats
Infection in human- little consequence.,[object Object]
CULTURE CHARACTERISTICS ,[object Object],	– visible growth after up to 8 weeks ,[object Object],	– Buff colour, dry bread crumb-like appearance 	– Growth is eugonic (M. bovis = dysgonic) ,[object Object],		– 35-37oC ,[object Object]
Heat-sensitive
Susceptible to alcohol, glutaraldehyde and formaldehyde.,[object Object]
THE DISEASE ,[object Object],	–transmission with prolonged contact between susceptible and active case 	–usually transmitted by airborne droplets, must penetrate deep into respiratory tree 	–infection can be via other routes: vingestion => infection through cervical or mesenteric LN
[object Object],	– Ability to Survive within Macrophages
TUBERCULIN TEST ,[object Object], broth in which tubercle bacilli had been grown. ,[object Object],	– Large, indurated reactions >>Post-Primary Tuberculosis. 	– No induration >> Protective immunity ,[object Object],	– Mantoux Method (Intracutaneous) 	– Heaf Method (Spring-loaded gun) 	– Tine Tests (Disposable single tests)
LABORATOY DIAGNOSIS 2. Microscopy: 	– Ziehl-Neelsen Stain 	– Fluorescent dyes 3. Culture: 	– Decontamination: 	– Lowenstein Jensen medium 4. Nucleic Acid Methods:
FAMILY: BACILLIACEAE HOZA, A. S
1. GENUS: BACILLUS ,[object Object],• Aerobic • Spore-Forming
I. Bacillus anthracis •Causative agent of Anthrax. Distinctive Properties • Large, Square - ended Rods, Arranged in Chains. • Non-Motile. • Spores: • Capsule: – Purple Stained >> McFadyan's Method (Polychrome Methylene Blue). • Colonies on BA: "Medusa Head Appearance"
Bacillus anthracis
PATHOGENESIS • Capsule > Invasiveness – D-glutamicacid • Exotoxin (Plasmid mediated) i. Protective Factor (Antigen). ii. Oedema Factor. iii. Lethal Factor. Blocks the AdenylCyclase Pathway > Increases vascular Permeability > Shock
LABORATORY DIAGNOSIS: • Specimens obtained from: 	a malignant pustule, sputum, blood. - Gram stain + fluorescent-antibody stain. - Motility - Capsule formation: Sodium bicarbonate +CO2 - String-of-pearls reaction: - Mouse test: - API >> Demonstration of Abs to the organism:
Bicarbonate agar and blood agar plate cultures of Bacillus anthracis
Negative encapsulation: Blood agar and bicarbonate agar plate cultures of Bacillus cereus
• TREATMENT – Penicillin, Ciprofloxacin • IMMUNIZATION –Animals > Live spore vaccine (Sterne strain) – Workers at Risk of Exposure > Anthrax Vaccine Absorbed (AVA) >> “Alum precipitated toxoid”
II. Bacillus cereus ,[object Object],• Clinical Syndromes: Severe Nausea &Vomiting. ii. Abdominal Cramps & Diarrhoea.
PATHOGENICITY: >> Due to an Enterotoxin. • Also Causes Disease in Patients with Underlying Disease. TREATMENT: >> Tetracycline, Erythromycin. • iii. B. subtilis: • iv. B. stearothermophilus.
2. GENUS: CLOSTRIDIUM
Distinctive properties ,[object Object]
Gram +vebacilli• Anaerobic (some facultative microaerophilic) ,[object Object],• Spore Forming ,[object Object]
Fermentative
Catalse -ve,[object Object]
Gelatin hydrolysed- group II e.gC. sordellii, C. botulinum, C.novyi, C .perfrigens, C hemolyticum, C. chauvoei, C. septicum.Terminal spores ,[object Object]
Gelatinhydrolized- group IV e.gC. tetani,[object Object]
Distribution ,[object Object]
Some spp are found in the GIT
Only few spp (>60) cause disease.Mode of infection ,[object Object]
Wounds: C. tetani, C chauvoei(sheep), C. septicum and other gas gangreen organisms  infect wounds.,[object Object]
Clostridium perfrigens Synm: C. welchii. Disease:enterotoxemia Occurrence: C. perfrigenstype A more widespread, present in air, soil, dust, manure, water of lakes, streams, and rivers. Has been isolated from vegetables, milk, cheese, canned food, fresh meat, shellfish and mollusks.

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Selected gram positives

  • 1. AFB &SELECTED GRAM POSITIVES BLS 206
  • 2. GENUS: MYCOBACTERIUM Classification – -Family Mycobacteriaceae -1 genus of medical importence = Mycobacteria -All are slow growing -All are acid-fast and contain large amounts of lipids intheir cell walls -Tubercle bacilli = M. tuberculosis, M. africanum, andM. bovis
  • 3.
  • 4. The Mycobacteria are divided into 4 groups (Runyon groups) based on growth rate and pigmentation:Photochromagens: - are non-pigmented when grown in the dark. - produce photoactivated pigments upon exposure to light e.gM. kansasii, M. marinum, M. asiaticum, M. simiae
  • 5. 2.Scotochromogens: -Produce deep yellow to orange pigments when grown in light or dark, - The color deepens upon two weeks exposure to light e.gM. gordonae, M. scrofulaceum, M. szulgai, M. xenopi. 3. Nonphotochromogens: -May produce pigment ranging from white to yellow, -The pigment does not intensify upon exposure to light.e.g. M. tuberculosis. M. avium, M. intracellulare, M. terrae, M. ulcerans. 4. Rapid growers: - organisms that form colonies within seven days.eg. M.phlei, M. smegamtis, M. fortuitum, M. chelonei.
  • 6.
  • 8.
  • 9.
  • 10. Several acid fast stains that may be used:1. Ziehl-Neelsen: -uses heat to get the primary stain of carbolfuchsin to penetrate the cell wall; - acid alcohol destaining; - methylene blue as the counterstain.
  • 11.
  • 12.
  • 14.
  • 15. Most grow on simple media.
  • 16. For primary isolation complex media should be used – Use of a nonselective, a selective and possibly a liquid media is recommended. Nonselective -May be egg or agar based. - May include malachite green to suppress growth of contaminating bacteria. Lowenstein-Jensen -egg based; -Colonies grow in 18-24 days. b. Middlebrook 7H10 and 7H11 – agar based; - colonies grow in 12-14 days.
  • 17. 2. Selective media: – Consists of one of the nonselective media plus added antimicrobial agents (malachite green, cyclohexamide, and nalidixic acid are often used) -The colonies of M. tuberculosis on the solid media are rough, dry, granular, nonpigmented to buff colored colonies. 3. Liquid media: - Media usually contains tween 80 and albumin and the organisms will grow faster than on solid media NB: Most Mycobacteria grow best in 5-10% CO2 and at 35-370 C.
  • 18.
  • 20. Further biochemical testing includes:Niacin reduction -M. tb. Is nitrate reduction+ and – for catalase at 680 C 2. Tween hydrolysis, 3. Arylsulfatase production, 4. Tellurite reduction, 5. Salt tolerance, and 6. Pyrazinamidase production
  • 22.
  • 23. interfees with mitochondrial function in mice and
  • 24. plays a role in the development of granulomatous lesions
  • 25. Iron capturing ability – required for survival inside phagocytes
  • 26.
  • 27. In cattle- pulmonary d’se with involvement of associated lymph nodes.
  • 28. Viscera and bone infections- occur in human
  • 30.
  • 32. Not all infected chickens show gross lesions.
  • 33. Water fowls – resistant
  • 34. In swine- disease found in lymph nodes of the head.
  • 36. Sporadic cases in horses, dogs and cats
  • 37.
  • 38.
  • 40.
  • 41.
  • 42.
  • 43.
  • 44. LABORATOY DIAGNOSIS 2. Microscopy: – Ziehl-Neelsen Stain – Fluorescent dyes 3. Culture: – Decontamination: – Lowenstein Jensen medium 4. Nucleic Acid Methods:
  • 46.
  • 47. I. Bacillus anthracis •Causative agent of Anthrax. Distinctive Properties • Large, Square - ended Rods, Arranged in Chains. • Non-Motile. • Spores: • Capsule: – Purple Stained >> McFadyan's Method (Polychrome Methylene Blue). • Colonies on BA: "Medusa Head Appearance"
  • 49. PATHOGENESIS • Capsule > Invasiveness – D-glutamicacid • Exotoxin (Plasmid mediated) i. Protective Factor (Antigen). ii. Oedema Factor. iii. Lethal Factor. Blocks the AdenylCyclase Pathway > Increases vascular Permeability > Shock
  • 50. LABORATORY DIAGNOSIS: • Specimens obtained from: a malignant pustule, sputum, blood. - Gram stain + fluorescent-antibody stain. - Motility - Capsule formation: Sodium bicarbonate +CO2 - String-of-pearls reaction: - Mouse test: - API >> Demonstration of Abs to the organism:
  • 51. Bicarbonate agar and blood agar plate cultures of Bacillus anthracis
  • 52. Negative encapsulation: Blood agar and bicarbonate agar plate cultures of Bacillus cereus
  • 53. • TREATMENT – Penicillin, Ciprofloxacin • IMMUNIZATION –Animals > Live spore vaccine (Sterne strain) – Workers at Risk of Exposure > Anthrax Vaccine Absorbed (AVA) >> “Alum precipitated toxoid”
  • 54.
  • 55. PATHOGENICITY: >> Due to an Enterotoxin. • Also Causes Disease in Patients with Underlying Disease. TREATMENT: >> Tetracycline, Erythromycin. • iii. B. subtilis: • iv. B. stearothermophilus.
  • 57.
  • 58.
  • 60.
  • 61.
  • 62.
  • 63.
  • 64. Some spp are found in the GIT
  • 65.
  • 66.
  • 67. Clostridium perfrigens Synm: C. welchii. Disease:enterotoxemia Occurrence: C. perfrigenstype A more widespread, present in air, soil, dust, manure, water of lakes, streams, and rivers. Has been isolated from vegetables, milk, cheese, canned food, fresh meat, shellfish and mollusks.
  • 68. FOOD POISONING: • Cl. perfringens Type A >> Enterotoxin. > Acute Abdominal Pain and Diarrhoea.
  • 69.
  • 70. Gram stain of Clostridium perfringens
  • 71. Exudate smear of Clostridium perfringens
  • 72. Tissue smear of Clostridium perfringens
  • 73. DISEASE: • Clostridialmyonecrosis. • Less severe wound infections. • Food poisoning.
  • 74.
  • 75. Blood agar plate with Cl. Perfringenscharacteristic double zone of hemolysis
  • 76. Clostridium chauvoeisynonym: C. feseri Disease: blackleg Wide spread, found in intestine and in normal tissues Toxins α toxin: hemolysin, necrotoxin ß toxin: deoxyribonuclease γ toxin: hyaluronidase ∆ toxin: hemolysin
  • 77. Phathogenicity Ruminats: Blackleg (cattle 4 months to 2yr)- ingestion/endogenous, sheep and goats- wounds lession dry, dark, with gas bubles, and a rancid odor, there may be bacteremia. Immunity: Formalized whole-broth cultures- life long Recovery from disease—renders the animal immune for life
  • 78.
  • 79. LABORATORY DIAGNOSIS: • Important: Diagnosis of Clostridium MyonecrosisShould Be Rapid and Made on Clinical Grounds. Direct Smear and Gram Stain of Material from Deep Within the Wound. ii. Culture: Tissue Aspirates or Deep Swabs Taken from Affected Muscle.
  • 80. TREATMENT: • Clostridium myonecrosis: Surgical removal of all infected and necrotic tissue. ii. Antibiotic and Antitoxin therapy. iii. Adminstration of hyperbaric oxygen.
  • 81. Clostridia that may be associated with gas gangrene: • Cl. perfringens Type A • Cl. Septicum • Cl. novyi Type A • Cl. Histolyticum • Cl. Sordellii
  • 82.
  • 83.
  • 85.
  • 86. Toxin is elaborated after spore germination.
  • 88.
  • 89.
  • 90.
  • 91. Blood Agar plate with C. botulinum
  • 92. VIRULENCE FACTORS • Botulinum Toxin >>> Neurotoxin. – Serologically 8 types of Toxins >>A, B, C1, C2, D, E, F & G. > Affect the Cholinergic System > Blocks the Release of Acetylcholine (at Points in Peripheral Nervous System).
  • 93.
  • 94. TREATMENT & PREVENTION Important: Specific Treatment should begin as quick as possible. >Polyvalent Antitoxin >>> Immediately. >Physiological support >NEVER Use a swollen or defective can.