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MOLECULAR BASIS OF CANCER 
Nethravathi R 
GN113011 
1
Cellular Basis of Cancer 
• Cancer is characterized by 
abnormal and uncontrolled 
growth 
• Cancer arises from a loss of 
normal growth control 
• In normal tissues, the rates of new 
cell growth and old cell death are 
kept in balance 
• In cancer, this balance is disrupted 
• This disruption can result from 
1) uncontrolled cell growth or 
2) loss of a cell's ability to undergo 
apoptosis 2
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3 
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UUnnccoonnttrroolllleedd
What causes Cancer? 
• Cancer is caused by 
alterations or mutations in 
the genetic code 
• Can be induced in somatic 
cells by: 
– Carcinogenic 
chemicals 
– Radiation 
– Some viruses 
• Heredity - 5% 
4
Cell cycle 
5 
Apoptosis 
Hanahan and Weinberg, Cell 100: 57, 2000 
Oncogenes 
Tumor Suppressor 
Angiogenesis Inv. and Mets
• What is the molecular basis of cancer? 
• Cancer is a genetic disease. 
• Mutations in genes result in altered proteins 
–During cell division 
–External agents 
–Random event 
• Most cancers result from mutations in somatic 
cells 
• Some cancers are caused by mutations in 
germline cells 
6
THEORIES OF CANCER GENESIS 
Standard Dogma 
• Proto-oncogenes (Ras – melanoma) 
• Tumor suppressor genes (p53 – various 
cancers) 
Modified Dogma 
• Mutation in a DNA repair gene leads to the 
accumulation of unrepaired mutations 
(xeroderma pigmentosum) 
Early-Instability Theory 
• Master genes required for adequate cell 
reproduction are disabled, resulting in 
aneuploidy (Philadelphia chromosome) 7
8
9
Chromosomal changes in the genome of cancer 
Insertion Inversion Isochromosomes 
10 
cells: tip of the iceberg 
Terminal 
Deletion 
Ring 
Chromosome 
Robertsonian 
Translocation 
Deletion Reciprocal 
translocation 
http://www.tokyo-med.ac.jp/genet/cai-e.htm 
Duplication
11 
Nucleotide changes in the genome of cancer 
cells: unseen site of the iceberg 
Nucleotide 
Deletions 
Nucleotide 
Insertions 
Nucleotide 
Substitutions 
http://www.tokyo-med.ac.jp/genet/cai-e.htm
12 
CANCER AND 
GENETICS 
• Approximately 90-95% of all cancers 
are sporadic. 
• 5-10% are inherited.
13 
GENES PLAYING ROLE IN 
CANCER DEVELOPMENT 
• Oncogenes 
• Tumor suppressor genes 
• DNA repair genes
14 
What are the genes responsible for tumorigenic 
cell growth? 
Normal 
+ 
- 
Proto-oncogenes Cell growth 
Cancer 
and 
Tumor suppressor genes proliferation 
Mutated or “activated” 
oncogenes Malignant 
transformation 
Loss or mutation of 
Tumor suppressor genes 
++
ONCOGENES 
• Oncogenes are mutated forms of cellular 
proto-oncogenes. 
• Proto-oncogenes code for cellular proteins 
which regulate normal cell growth and 
differentiation. 
15
16 
Five types of proteins encoded by proto-oncogenes 
participate in control of cell growth: 
Class I: Growth Factors 
Class II: Receptors for Growth Factors and 
Hormones 
Class III: Intracellular Signal Transducers 
Class IV: Nuclear Transcription Factors 
Class V: Cell-Cycle Control Proteins
17 
Functions of Cellular Proto-Oncogenes 
4. Nuclear 
Proteins: 
Transcription 
Factors 
5. Cell Growth 
Genes 
1. Secreted Growth Factors 
3. Cytoplasmic 
Signal Transduction 
Proteins 
2. Growth Factor Receptors
18 
A generic signalling 
pathway
ONCOGENES 
• proto-oncogene = ras 
• Oncogene = mutated ras 
• Always activated 
• Always stimulating 
• proliferation 
19
20 
Amino acid substitutions in Ras family proteins 
(inactivates GTPase) 
amino acid position 
Ras gene 12 59 61 Tumor 
c-ras (H, K, N) Gly Ala Gln normal cells 
H-ras Gly Ala Leu lung carcinoma 
Val Ala Gln bladder carcinoma 
K-ras Cys Ala Gln lung carcinoma 
Arg Ala Gln lung carcinoma 
Val Ala Gln colon carcinoma 
N-ras Gly Ala Lys neuroblastoma 
Gly Ala Arg lung carcinoma 
Murine sarcoma virus 
H-ras Arg Thr Gln Harvey strain 
K-ras Ser Thr Gln Kirsten strain
Activation mechanisms of proto-oncogenes 
proto-oncogene --> oncogene 
21
CHROMOSOMAL REARRANGEMENTS OR TRANSLOCATIONS 
Neoplasm Translocation Proto-oncogene 
Burkitt lymphoma t(8;14) 80% of cases c-myc1 
22 
t(8;22) 15% of cases 
t(2;8) 5% of cases 
Chronic myelogenous t(9;22) 90-95% of cases bcr-abl2 
leukemia 
Acute lymphocytic t(9;22) 10-15% of cases bcr-abl2 
Leukemia 
1c-myc is translocated to the IgG locus, which results in its activated expression 
2bcr-abl fusion protein is produced, which results in a constitutively active abl kinase
23 
GENE AMPLIFICATION 
Oncogene Amplification Source of tumor 
c-myc ~20-fold leukemia and lung carcinoma 
N-myc 5-1,000-fold neuroblastoma 
retinoblastoma 
L-myc 10-20-fold small-cell lung cancer 
c-abl ~5-fold chronic myoloid leukemia 
c-myb 5-10-fold acute myeloid leukemia 
colon carcinoma 
c-erbB ~30-fold epidermoid carcinoma 
K-ras 4-20-fold colon carcinoma 
30-60-fold adrenocortical carcinoma
24 
Oncogenes are usually dominant 
(gain of function) 
• cellular proto-oncogenes that have been mutated 
(and “activated”) 
• cellular proto-oncogenes that have been captured by 
retroviruses and have been mutated in the process 
(and “activated”) 
• virus-specific genes that behave like cellular proto-oncogenes 
that have been mutated to oncogenes (i.e., 
“activated”)
The result: 
• Overproduction of growth factors 
• Flooding of the cell with replication signals 
• Uncontrolled stimulation in the intermediary 
pathways 
• Cell growth by elevated levels of transcription 
factors 
25
TUMOR SUPPRESSOR GENES 
• LOSS OF FUNCTION 
• Normal function - inhibit cell proliferation 
• Absence/inactivation of inhibitor --> cancer 
• Both gene copies must be defective 
26
Rb gene 
• Rb protein controls cell cycle moving past G1 checkpoint 
• Rb protein binds regulatory transcription factor E2F 
• E2F required for synthesis of replication enzymes 
• E2F - Rb bound = no transcription/replication 
• Growth factor --> Ras pathway --> G1Cdk-cyclin synthesized 
• Active G1 Cdk-cyclin kinase phosphorylates Rb 
• Phosphorylated Rb cannot bind E2F --> S phase 
– Disruption/deletion of Rb gene 
– Inactivation of Rb protein 
--> uncontrolled cell proliferation --> cancer 
27
p53 
• Phosphyorylated p53 activates 
transcription of p21 gene 
• p21 Cdk inhibitor (binds Cdk-cyclin 
complex --> inhibits 
kinase activity) 
• Cell cycle arrested to allow 
DNA to be repaired 
• If damage cannot be repaired 
--> cell death (apoptosis) 
• Disruption/deletion of p53 gene 
• Inactivation of p53 protein 
--> uncorrected DNA damage 
--> uncontrolled cell proliferation 
--> cancer 
28
29
30
31 
TUMOR SUPPRESSOR GENES 
Disorders in which gene is affected 
Gene (locus) Function Familial Sporadic 
DCC (18q) cell surface unknown colorectal 
interactions cancer 
WT1 (11p) transcription Wilm’s tumor lung cancer 
Rb1 (13q) transcription retinoblastoma small-cell lung 
carcinoma 
p53 (17p) transcription Li-Fraumeni breast, colon, 
syndrome & lung cancer 
BRCA1(17q) transcriptional breast cancer breast/ovarian 
tumors 
BRCA2 (13q) regulator/DNA repair
32 
DNA REPAIR GENES 
These are genes that ensure each strand of genetic 
information is accurately copied during cell division of the 
cell cycle. 
Mutations in DNA repair genes lead to an increase in the 
frequency of mutations in other genes, such as proto-oncogenes 
and tumor suppressor genes. 
i.e. Breast cancer susceptibility genes (BRCA1 and BRCA2) 
Hereditary non-polyposis colon cancer susceptibility genes 
(MSH2, MLH1, PMS1, PMS2) have DNA repair functions. 
Their mutation will cause tumorigenesis.
Van Gent et al, 
2001 
33 
MMoolleeccuullaarr 
mmeecchhaanniissmmss ooff 
DDNNAA ddoouubbllee 
ssttrraanndd bbrreeaakk 
rreeppaaiirr 
BRCA1/2
34 
IMPORTANCE OF DNA REPAIR
35 
Summary of 30 years of research (1971-2001) 
Hanahan & Weinberg 2000
36 
Translocation and Bcr-Abl fusion in CML
37 
Smart bullet STI-571 lockes itself to the target molecule 
STI-571
38 
STI-571 against Bcr-Abl
Molecular Basis of Multistep 
Carcinogenesis
40
THANK YOU 
41
42
43 
Stem cells as the target of carcinogens 
Post mitotic Stem cell 
Differentiated Normal 
senescent 
differentiated 
cell 
Benign 
tumor 
Grade 2 
malignancy 
Grade 3 or 4 
malignancy
Invasion and Metastasis 
• Abnormal cells proliferate 
and spread (metastasize) to 
other parts of the body 
• Invasion - direct 
migration and 
penetration into 
neighboring tissues 
• Metastasis - cancer cells 
penetrate into lymphatic 
system and blood vessels 
44
45 
Malignant versus Benign Tumors 
• Benign tumors 
generally do not 
spread by 
invasion or 
metastasis 
• Malignant 
tumors are 
capable of 
spreading by 
invasion and 
metastasis
46 
KNUDSON TWO HIT HYPOTHESIS IN SPORADIC CASES 
RB RB 
RB 
LOH 
Normal 
Cells 
RB 
Mutation 
Tumor cells 
RB RB 
Inactivation of a tumor 
suppressor gene 
requires two somatic 
mutations.
47 
KNUDSON TWO HIT HYPOTHESIS IN FAMILIAL 
CASES 
Familial RB (%30) 
RB rb 
Normal cells 
rb RB rb 
Tumor cells Normal cells 
Inactivation of a tumor suppressor 
gene requires two mutations, inherited 
mutation and somatic mutation. 
RB 
LOH
48 
CELL CYCLE 
Daugther cell 
Mitosis 
DNA replication 
Gateway 
Control Point 
Growth 
Factors 
Cell cycle 
inhibitors 
S CELL CYCLE
Multiple mutations lead to colon cancer 
Genetic changes --> tumor changes 
49 
Cellular 
Tumor Progression
50 
Thousands of Targets 
HERCEPTIN 
STI-571 
? 
? 
? 
? ? 
? 
? 
? 
? ? 
? 
? 
? 
? 
? 
? 
? 
?
THANK YOU 
51

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Molecular basis of Cancer

  • 1. MOLECULAR BASIS OF CANCER Nethravathi R GN113011 1
  • 2. Cellular Basis of Cancer • Cancer is characterized by abnormal and uncontrolled growth • Cancer arises from a loss of normal growth control • In normal tissues, the rates of new cell growth and old cell death are kept in balance • In cancer, this balance is disrupted • This disruption can result from 1) uncontrolled cell growth or 2) loss of a cell's ability to undergo apoptosis 2
  • 3. Cancer CCeellll DDoo NNoott GGrrooww FFaasstteerr TThhaann 3 NNoorrmmaall CCeellllss RRaatthheerr,, TThheeiirr GGrroowwtthh iiss JJuusstt UUnnccoonnttrroolllleedd
  • 4. What causes Cancer? • Cancer is caused by alterations or mutations in the genetic code • Can be induced in somatic cells by: – Carcinogenic chemicals – Radiation – Some viruses • Heredity - 5% 4
  • 5. Cell cycle 5 Apoptosis Hanahan and Weinberg, Cell 100: 57, 2000 Oncogenes Tumor Suppressor Angiogenesis Inv. and Mets
  • 6. • What is the molecular basis of cancer? • Cancer is a genetic disease. • Mutations in genes result in altered proteins –During cell division –External agents –Random event • Most cancers result from mutations in somatic cells • Some cancers are caused by mutations in germline cells 6
  • 7. THEORIES OF CANCER GENESIS Standard Dogma • Proto-oncogenes (Ras – melanoma) • Tumor suppressor genes (p53 – various cancers) Modified Dogma • Mutation in a DNA repair gene leads to the accumulation of unrepaired mutations (xeroderma pigmentosum) Early-Instability Theory • Master genes required for adequate cell reproduction are disabled, resulting in aneuploidy (Philadelphia chromosome) 7
  • 8. 8
  • 9. 9
  • 10. Chromosomal changes in the genome of cancer Insertion Inversion Isochromosomes 10 cells: tip of the iceberg Terminal Deletion Ring Chromosome Robertsonian Translocation Deletion Reciprocal translocation http://www.tokyo-med.ac.jp/genet/cai-e.htm Duplication
  • 11. 11 Nucleotide changes in the genome of cancer cells: unseen site of the iceberg Nucleotide Deletions Nucleotide Insertions Nucleotide Substitutions http://www.tokyo-med.ac.jp/genet/cai-e.htm
  • 12. 12 CANCER AND GENETICS • Approximately 90-95% of all cancers are sporadic. • 5-10% are inherited.
  • 13. 13 GENES PLAYING ROLE IN CANCER DEVELOPMENT • Oncogenes • Tumor suppressor genes • DNA repair genes
  • 14. 14 What are the genes responsible for tumorigenic cell growth? Normal + - Proto-oncogenes Cell growth Cancer and Tumor suppressor genes proliferation Mutated or “activated” oncogenes Malignant transformation Loss or mutation of Tumor suppressor genes ++
  • 15. ONCOGENES • Oncogenes are mutated forms of cellular proto-oncogenes. • Proto-oncogenes code for cellular proteins which regulate normal cell growth and differentiation. 15
  • 16. 16 Five types of proteins encoded by proto-oncogenes participate in control of cell growth: Class I: Growth Factors Class II: Receptors for Growth Factors and Hormones Class III: Intracellular Signal Transducers Class IV: Nuclear Transcription Factors Class V: Cell-Cycle Control Proteins
  • 17. 17 Functions of Cellular Proto-Oncogenes 4. Nuclear Proteins: Transcription Factors 5. Cell Growth Genes 1. Secreted Growth Factors 3. Cytoplasmic Signal Transduction Proteins 2. Growth Factor Receptors
  • 18. 18 A generic signalling pathway
  • 19. ONCOGENES • proto-oncogene = ras • Oncogene = mutated ras • Always activated • Always stimulating • proliferation 19
  • 20. 20 Amino acid substitutions in Ras family proteins (inactivates GTPase) amino acid position Ras gene 12 59 61 Tumor c-ras (H, K, N) Gly Ala Gln normal cells H-ras Gly Ala Leu lung carcinoma Val Ala Gln bladder carcinoma K-ras Cys Ala Gln lung carcinoma Arg Ala Gln lung carcinoma Val Ala Gln colon carcinoma N-ras Gly Ala Lys neuroblastoma Gly Ala Arg lung carcinoma Murine sarcoma virus H-ras Arg Thr Gln Harvey strain K-ras Ser Thr Gln Kirsten strain
  • 21. Activation mechanisms of proto-oncogenes proto-oncogene --> oncogene 21
  • 22. CHROMOSOMAL REARRANGEMENTS OR TRANSLOCATIONS Neoplasm Translocation Proto-oncogene Burkitt lymphoma t(8;14) 80% of cases c-myc1 22 t(8;22) 15% of cases t(2;8) 5% of cases Chronic myelogenous t(9;22) 90-95% of cases bcr-abl2 leukemia Acute lymphocytic t(9;22) 10-15% of cases bcr-abl2 Leukemia 1c-myc is translocated to the IgG locus, which results in its activated expression 2bcr-abl fusion protein is produced, which results in a constitutively active abl kinase
  • 23. 23 GENE AMPLIFICATION Oncogene Amplification Source of tumor c-myc ~20-fold leukemia and lung carcinoma N-myc 5-1,000-fold neuroblastoma retinoblastoma L-myc 10-20-fold small-cell lung cancer c-abl ~5-fold chronic myoloid leukemia c-myb 5-10-fold acute myeloid leukemia colon carcinoma c-erbB ~30-fold epidermoid carcinoma K-ras 4-20-fold colon carcinoma 30-60-fold adrenocortical carcinoma
  • 24. 24 Oncogenes are usually dominant (gain of function) • cellular proto-oncogenes that have been mutated (and “activated”) • cellular proto-oncogenes that have been captured by retroviruses and have been mutated in the process (and “activated”) • virus-specific genes that behave like cellular proto-oncogenes that have been mutated to oncogenes (i.e., “activated”)
  • 25. The result: • Overproduction of growth factors • Flooding of the cell with replication signals • Uncontrolled stimulation in the intermediary pathways • Cell growth by elevated levels of transcription factors 25
  • 26. TUMOR SUPPRESSOR GENES • LOSS OF FUNCTION • Normal function - inhibit cell proliferation • Absence/inactivation of inhibitor --> cancer • Both gene copies must be defective 26
  • 27. Rb gene • Rb protein controls cell cycle moving past G1 checkpoint • Rb protein binds regulatory transcription factor E2F • E2F required for synthesis of replication enzymes • E2F - Rb bound = no transcription/replication • Growth factor --> Ras pathway --> G1Cdk-cyclin synthesized • Active G1 Cdk-cyclin kinase phosphorylates Rb • Phosphorylated Rb cannot bind E2F --> S phase – Disruption/deletion of Rb gene – Inactivation of Rb protein --> uncontrolled cell proliferation --> cancer 27
  • 28. p53 • Phosphyorylated p53 activates transcription of p21 gene • p21 Cdk inhibitor (binds Cdk-cyclin complex --> inhibits kinase activity) • Cell cycle arrested to allow DNA to be repaired • If damage cannot be repaired --> cell death (apoptosis) • Disruption/deletion of p53 gene • Inactivation of p53 protein --> uncorrected DNA damage --> uncontrolled cell proliferation --> cancer 28
  • 29. 29
  • 30. 30
  • 31. 31 TUMOR SUPPRESSOR GENES Disorders in which gene is affected Gene (locus) Function Familial Sporadic DCC (18q) cell surface unknown colorectal interactions cancer WT1 (11p) transcription Wilm’s tumor lung cancer Rb1 (13q) transcription retinoblastoma small-cell lung carcinoma p53 (17p) transcription Li-Fraumeni breast, colon, syndrome & lung cancer BRCA1(17q) transcriptional breast cancer breast/ovarian tumors BRCA2 (13q) regulator/DNA repair
  • 32. 32 DNA REPAIR GENES These are genes that ensure each strand of genetic information is accurately copied during cell division of the cell cycle. Mutations in DNA repair genes lead to an increase in the frequency of mutations in other genes, such as proto-oncogenes and tumor suppressor genes. i.e. Breast cancer susceptibility genes (BRCA1 and BRCA2) Hereditary non-polyposis colon cancer susceptibility genes (MSH2, MLH1, PMS1, PMS2) have DNA repair functions. Their mutation will cause tumorigenesis.
  • 33. Van Gent et al, 2001 33 MMoolleeccuullaarr mmeecchhaanniissmmss ooff DDNNAA ddoouubbllee ssttrraanndd bbrreeaakk rreeppaaiirr BRCA1/2
  • 34. 34 IMPORTANCE OF DNA REPAIR
  • 35. 35 Summary of 30 years of research (1971-2001) Hanahan & Weinberg 2000
  • 36. 36 Translocation and Bcr-Abl fusion in CML
  • 37. 37 Smart bullet STI-571 lockes itself to the target molecule STI-571
  • 39. Molecular Basis of Multistep Carcinogenesis
  • 40. 40
  • 42. 42
  • 43. 43 Stem cells as the target of carcinogens Post mitotic Stem cell Differentiated Normal senescent differentiated cell Benign tumor Grade 2 malignancy Grade 3 or 4 malignancy
  • 44. Invasion and Metastasis • Abnormal cells proliferate and spread (metastasize) to other parts of the body • Invasion - direct migration and penetration into neighboring tissues • Metastasis - cancer cells penetrate into lymphatic system and blood vessels 44
  • 45. 45 Malignant versus Benign Tumors • Benign tumors generally do not spread by invasion or metastasis • Malignant tumors are capable of spreading by invasion and metastasis
  • 46. 46 KNUDSON TWO HIT HYPOTHESIS IN SPORADIC CASES RB RB RB LOH Normal Cells RB Mutation Tumor cells RB RB Inactivation of a tumor suppressor gene requires two somatic mutations.
  • 47. 47 KNUDSON TWO HIT HYPOTHESIS IN FAMILIAL CASES Familial RB (%30) RB rb Normal cells rb RB rb Tumor cells Normal cells Inactivation of a tumor suppressor gene requires two mutations, inherited mutation and somatic mutation. RB LOH
  • 48. 48 CELL CYCLE Daugther cell Mitosis DNA replication Gateway Control Point Growth Factors Cell cycle inhibitors S CELL CYCLE
  • 49. Multiple mutations lead to colon cancer Genetic changes --> tumor changes 49 Cellular Tumor Progression
  • 50. 50 Thousands of Targets HERCEPTIN STI-571 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Editor's Notes

  1. Cancer arises from a loss of normal growth control. In normal tissues, the rates of new cell growth and old cell death are kept in balance. In cancer, this balance is disrupted. This disruption can result from uncontrolled cell growth or loss of a cell's ability to undergo "apoptosis." Apoptosis, or programmed cell death, is the mechanism by which old or damaged cells normally self-destruct.
  2. Cancer is often perceived as a disease that strikes for no apparent reason. This is because scientists don't know all the reasons. But many of the causes of cancer have already been identified. Besides heredity, scientific studies point to the existence of three main categories of factors that contribute to the development of cancer: chemicals (e.g., from smoking or diet), radiation, and viruses or bacteria. In some cases, we don't know. We do know that there are chemical, physical and biological agents that trigger the cell mutations that cause cancer. These are called carcinogens, and include tobacco, ultraviolet radiation and asbestos. A number of cancers share risk factors. One in eight cancers and one in five cancer deaths are due to smoking and about 1 per cent of cancers are related to alcohol consumption. Many cancers occur as a direct result of dietary influences, from infectious agents or exposure to radiation (especially skin cancers from ultraviolet radiation), while a few result from inherited faulty or altered genes. Myths: It is a common myth that injuries can cause cancer. Cancer is not caused by a fall, fracture, bruise or bump. Sometimes it is when a person seeks medical help for an injury that a tumour is discovered, but it may have been there for a long time and is not due to the injury.Some people believe that cancer may be caused by stress, but there is not yet any reliable evidence to support this. Cancer is caused by mutations in somatic cells. They can be induced (by carcinogens, radiation and some viruses and bacteria), or some individuals have inherited genetic mutations that predispose trhem to develop specific types of cancer.
  3. Cancers are capable of spreading through the body by two mechanisms: invasion and metastasis. Invasion refers to the direct migration and penetration by cancer cells into neighboring tissues. Metastasis refers to the ability of cancer cells to penetrate into lymphatic and blood vessels, circulate through the bloodstream, and then invade normal tissues elsewhere in the body.
  4. Depending on whether or not they can spread by invasion and metastasis, tumors are classified as being either benign or malignant. Benign tumors are tumors that cannot spread by invasion or metastasis; hence, they only grow locally. Malignant tumors are tumors that are capable of spreading by invasion and metastasis. By definition, the term "cancer" applies only to malignant tumors.