Dr.saumya singh Dr.D.Y.Patil P.G.3rd yr

1. Dr. Saumya Singh

2. Order of Biochemical Tests

Test for enzymes

Test for metabolism of carbohydrates and related
products

Test for specific break down products

Test to show ability to utilize a specific substance

Test for metabolism of protein and amino acids

3. Test for Enzymes
 Catalase test
 Oxidase test
 Urease test
 ONPG (ß- galactosidase)
 Nitrate reduction

4. Catalase test
Principle:
Demonstrate the presence of an enzyme catalase.
Catalase is an enzyme that decomposes hydrogen peroxide into
water and oxygen. Chemically,it is a hemoprotein structurally
similar to hemoglobin
2H2o2
catalase
2H2o + o2 (gas bubbles)

5. • Catalase is present in most cytochrome containing aerobic and
facultative anaerobic bacteria (except streptococcus spp).
Anaerobic bacteria eg. clostridium spp. possess the peroxidase
enzyme in lieu of Catalase.
• Hydrogen peroxide forms as one of the oxidative end product of
aerobic carbohydrate metabolism. If this is allowed to
accumulate in the bacterial cells it becomes lethal to the bacteria.
• Catalase thus helps in converting H2o2 to H2o and o2
• Optimal PH for Catalase action is 7.

6. Reagents:
3% / 30%hydrogen peroxide stored in dark brown bottle under refrigeration
18 to 24 hrs culture of the organism to be tested
Quality control:
Positive control - Staphylococcus aureus
Negative control – Streptococcus spp
Methods:
•Slide method
•Tube method
•Direct plate method

7. Slide Method
With an inoculating wire
transfer growth from the
centre of the colony to the
surface of the glass slide.
Add 1 drop of 30% H2O2
and observed for bubble
formation.
Tube Method
Direct Plate Method
Small amount of culture to
be tested is picked from
nutrient agar with a clean
sterile glass rod/capillary
tube and inserted into
H2O2 solution held in a
small clean tube.
1 ml of 3% H2O2 is
poured over a 24 hour
nutrient agar culture of the
test organism directly.
Result: The rapid and sustained appearance of bubbles/effervascence indicates a
positive test.A few tiny bubbles forming after 20 to 30 sec is not considered a positive
test.
Precaution: Avoid colonies from blood agar( contains catalase )
Platinum wire / Nichrome wire should be used with caution.

8. Positive:
Negative:
•Micrococcus
•Saphylococcus
•Bacillus
•Listeria monocytogenes
•Corynebacterium (except C.pyogenes &
C.haemolyticum)
•Moraxella spp (except Kingella kingae)
•Enterobacteriacae
•Gonococcus & Meningococcus
•Vibrio cholerae
•Pseudo/Aero/Plesiomonas
•Streptococcus
•Clostridium
•Erysipleothrix

9. Oxidase Test
Principle:
Determines the presence of bacterial enzyme cytochrome oxidase.
Cytochromes are iron containing hemoproteins and in aerobic respiration they
transfer electrons(H) to oxygen to form water.
The cytochrome oxidase test uses certain reagent dyes such as
p- phenylenediamine dihydrochloride,that substitute for oxygen
as artificial electron acceptors.
In the reduced state the dye is colourless; however in the presence of
cytochrome oxidase and atmospheric oxygen,p- phenylenediamine
dihydrochloride is oxidized forming indophenol blue.

10. Oxidase reagent:
•
1% Kovac’s reagent(tetra methyl -p-phenylenediamide dihydrochloride )
•
1% Gordons & Mcleods reagent(Dimethly - p- phenylenediamide
dihydrochloride)
Modified Oxidase Test:
• 6%TMPD Reagent in Dimethly sulfoxide (DMSO) used for differentiating
micrococci spp (positive in 30 secs) from staphylococci.
•
Ewing Johnson Modification ( 0.1gm α-naphthol in 10ml95% ethanol,
0.1gm p-aminodimethylaniline oxalate in 10ml d.w).
Quality control:
•
Positive:
P.aeruginosa
Negative: E.coli

11. Direct plate method
Wet filter paper method
(KOVAC’S METHOD)
Dry filter paper method
2 to 3 drops of reagent is added
directly to colonies growing on
medium.
(1gm in100ml distilled water)
A strip of Whatman’s No. 1
filter paper soaked in freshly
prepared 1% Oxidase reagent is
smeared with test bacterium.
A strip of Whatman’s No. 1
filter paper is soaked in
freshly prepared 1% Oxidase
reagent,drained for 30 sec,
freez dried and stored in dark
bottle tightly. For use, strip is
removed, laid in Petri dish ,
moistened with distilled
water and smeared with test
bacterium.
Result:
A positive reaction is indicated by a Deep blue colour appearing within 10 sec.
Precautions: 1) Stainless steel or Nichrome inoculating loop and wires should not be used.
2) Tetra methyl derivative of pPD is recommended.
3) Do not perform the test from colonies growing in Macconkey medium.

12. Positive
•Neisseria spp
•Haemophillus sps
•Pseudomonas spp(except P.maltophilia)
•Aeromonas spp
•Alcaligenes
•Vibrio
•Campylobacter
•Plesiomonas shigelloides
•Micrococcus spp
•Moraxella
Negative
•Enterobacteriaceae
•Acenitobacter spp
•Brucella canis
•Bordetella parapertusis
•Franscisella tularensis
•Gardenella vaginalis

13. Urease Test
Principle :
To determine the ability of the organism to split urea forming 2
molecules of ammonia by the action of the enzyme Urease with
resulting alkalinity
Urease
NH2.CO.NH2 + H2O
2NH3 + CO2
phenolphthalein
( Colourless)
ph < 8.1
Ammonia
phenolphthalein
( pink red)
ph > 8.1

14. Stuarts Urea broth (pH 6.8)
• Monopotassium phosphate-9.1gm
•Disodium phosphate-9.5gm
•Urea-20gm
•Phenol red indicator-0 .02gm
•Yeast extract-0.1gm
•Distilled water- 1l
Christensens urea agar (pH 6.8)
•Peptone-1gm
•Glucose-1gm
•Sodium chloride-5gm
•Monopotassium phosphate-2gm
•Urea-20gm
•Phenol red indicator-0.012gm
•Agar-15gm
•Distilled water-1l
Quality control
•
Positive – Proteus spp & Klebsiella spp(weak positive)
•
Negative – E.coli

15. Procedure:
The surface of the agar slant is streaked with the test organism / the broth
medium is inoculated with the loopful of pure culture of the test organism
and incubated at 37 c for 18-24 hrs.
Interpretation:
Rapid hydrolysers gives +ve results in 1-2 hrs, less active sp. require 3 or more days.
Stuarts broth –
Positive red colour through out the broth.
Christensens agar–Rapid urea splitters red through out the medium,
Slow urea splitters red colour initially in slant only
& then gradually entire tube.
No urea hydrolysis-Negative yellow or straw colour

16. Precaution:
Both the Urease test medium depend upon the demonstration of alkalinity i.e.
not specific for Urease i.e. even protein hydrolysis may result in alkalinity
hence false positive may be seen in Pseudomonas . To eliminate such false
positivity control test using the same medium without urea should be tested.

17. Elek’s test:
Reagent :
• Urea-4gm
• KH2PO4-50ML
• NaOH-35ML
• Distilled water -115ml
• Nessler’s reagent(50gm KI in 50ml of H2O,add Hgcl2 sol.until a
perm.precipitate appears.add 200ml NaOH and make upto 1lt with water).
Method :
Emulsify the organism in 0.5ml of substrate tube,place the tube in water bath
at 37 c for 3hr.Remove the tube and add 0.1ml Nessler’s reagent and read
after 3mins.
Positive-yellow to dark brown precipitate.
Negative –control and negative tubes are colourless.

18. Alternate tests:
Reagent impregnated urease strip test (2hrs)
Key urease tablets test
Urea discs
Ewings Urea R broth (pH 6.9)
Positive
Proteus
Klebsiella pneumoniae
Actinobacillus sp.
Bacillus lentus
Enterobacter
Cryptococcus
Helicobacter pylori
Bordetella bronchoseptica
Negative
Escherichia
Providencia
Aeromonas
Edwarseilla
S.typhi

19. 0-Nitrophenyl-ß-D-Galactopyranoside (ONPG) Test
Principle:
To demonstrate the presence or absence of the enzyme ß Galactosidase
Biochemistry:
O – Nitrophenyl – ß – D – galactopyranoside is structurally similar to lactose except
that orthonitrophenyl has been substituted for glucose
H2o
ONPG (colorless)
Galactose+ Orthonitrophenol(yellow)
galactosidase
H20
Lactose
Galactose + Glucose
galactosidase
It differentiate late lactose fermenting organism and is of particular use in
identification of enterobacteria

20. • Disaccharide compound composed of glucose and galactose connected through an
oxygen linkage known as galactoside bond.
• Lactose fermentation depends upon the 2 enzymes ß-galactoside permease and
ß-galactosidase.
• ß-galactoside permease permits the transport of ß-galactoside such as lactose into the
bacterial cell wall.
• ß-galactosidase cleave the ß-galactoside bond after it enters into the bacterial cell
liberating glucose and galactose.
•Non lactose fermenting bacteria are devoid of both the enzymes.
•Late lactose fermenters lack the enzyme permease but have ß- galactosidase activity and
so the permeases activity occurs sluggishly and lactose fermentation is delayed by
2-8 days. In these instances a +ve ONPG test may provide a rapid identification of
delayed lactose fermentors .

21. Media and reagents:
pH 7.0-7.5
Sodium phosphate buffer-(0.01mol/lt,ph7.5) 100ml
O-Nitrophenyl- ß-D-galactopyranoside(ONPG)-0.6gm
Toluene
Physiologic saline 0.85%
Quality control:
Positive – E.coli
Negative – Proteus spp

22. TUBE METHOD
A loopful bacterial growth (KIA,TSI agar) is
emulsified in 0.5 ml of physiologic saline. 1
drop of toluene is added and vigorously mix.
An equal quantity of buffer ONPG solution is
added and mixture is placed at 37 waterbath.
DISC METHOD
A loopful of bacterial suspension is added to
the ONPG substrate ( 1 ml of distilled water to
a tablet in test tube , placed in 37 waterbath.
Interpretation:
Yellow color within 5-10 mins - Positive
Colorless after 24 hrs
- Negative
Precaution:
•Glucose containing medium should not be used.
•Do not use if medium yellow.
•Store away from direct sunlight, ONPG is light sensitive

23. Nitrate reduction
Principle:
To determine the ability of the organism to reduce nitrate to
nitrites or free nitrogen gas in the presence of enzyme nitrate
reductase.
Purpose:
Aid in the identification of Enterobacteriaceae(+) except certain
biotypes of Pantoa agglomerans and certain species of Serratia
and Yersinia(-).
Also aids in identifying members of
Haemophilus,Neisseria,Moraxella species.

24. Media and Reagent:
A. Nitrate Broth or Nitrate agar (Slant)
Beef extract-3gm
Peptone-5gm
Potassium nitrate-1gm
Agar (nitrite-free)-12gm
Distilled water -1lt
B. Reagent A
α – Naphthylamine -5gm
Acetic acid (5N), 30%-1lt
C. Reagent B
Sulfanilic acid-8gm
Acetic acid (5N) , 30%-1lt
Quality Control:
Positive control - E.coli
Negative control - Acinetobacter baumannii

25. Procedure:
Inoculate the medium and incubate at 37 C for 18 to 24 hours.At the
end of incubation add 1 ml of each of reagent A and B to the test
medium.
Result:
Positive – Development of red colour within 30 sec.
Negative-No colour change
* Negative reaction(True)- Nitrates not reduced
* Negative reaction(False)- Reduction of products other than
nitrites ( test reaction detects only nitrites).
Development of red colour after adding of zinc dust indicates the
presence of residual nitrates and confirms true negative reactions.
Note- α Naphthylamine is potentially carcinogenic.

28. Order of Biochemical Tests

Test for enzymes

Test for specific break down products

Test to show ability to utilize a specific substance

Test for metabolism of protein and amino acids

Test for metabolism of carbohydrates and related products

29. Test for Break down products
 Methyl Red Test
 Voges-Proskauer (Acetoin Production) Test

30. Methyl Red Test
Principle:
To test the ability of the organism to produce and maintain stable acid end
products (lactic,acetic,formic) from glucose fermentation and to overcome
the buffering capacity of the system. This is a qualitative test for acid
production.
Biochemistry:
 Methyl red is a pH indicator with a range between 6(Y) and 4.4(R).
 The pH at which the MR detects acid is considerably lower than the pH of
other indicators.
 Thus to produce a colour change the test organism must produce a large
quantity of acid from the substrate being used.

31. Media & Reagents :
 MR/VP Broth (glucose phosphate peptone water):
Peptone-5 gm
K2HPO4-4 gm
Water-1 L
Glucose 10%-50 ml
 MR pH indicator : MR 0.1 g in 300ml of 95% Ethanol & Distilled water 200ml.
Quality Control:
Positive : E.coli
Negative : E. aerogenes

32. Procedure:
Inoculate the MR/VP broth with a pure culture of the test organism and
incubate at 37 for 48 to 72 hrs
Add 5 drops of MR reagent to the broth.
Interpretation:
Positive : red color (ph 4.4 or less) at the surface of the
medium.
Negative : Yellow color (pH 6.0) at the surface of
the medium.

33. Positive
Negative:
E.coli
Klebseilla
Yersinia spp
Enterobacter aerogenes
Enterobacter cloacae
Listeria monocytogenes
Gram negative non enteric bacilli
Precaution: orange colour reaction is considered negative.

34. Voges Proskauer Test
Principle :
To determine the ability of the organisms to produce neutral end product
acetyl methyl carbinol (acetoin) from glucose fermentation. In presence of
atmospheric oxygen and KOH, acetoin is converted to Diacetyl and αnaphthol (serves as a catalyst) along with arginine to produce red complex.
Quality control :
Positive : Enterobacter aerogenes
Negative : E.coli

35. Media & Reagents:
MR/VP Broth : pH 6.9
Peptone – 1.5 g
Glucose 10% solution – 50 ml
K2HPO4-5 g
water-1 L
0’Meara reagent:(40g KOH & 0.3g creatine in 100ml distilled water)/
VP (A) : α naphthol 5% (color intensifier)
( α- naphthol 5g in 100ml Absolute ethyl alcohol)
VP (B) : 40% potassium hydroxide (oxidising agent)
( KOH 40g in 100ml Distilled water)

36. Procedure:
Inoculate pure culture of the test organism into MR/VP broth and incubate
for 24 hrs at 37 c
Aliquot 1 ml of the broth to a sterile test tube and add 0.6ml of VP(A)
followed by 0.2ml of VP(B)/O’Meara rg(0.5ml)
Shake the tube gently to expose the medium to atmospheric oxygen and
allow the tube to remain undisturbed for 10 to 15 mins.
Intrepretation:
Positive : Pinkish red colour at the surface of the
medium.
Negative :Yellow colour at the surface of the
medium.

37. Alternate Tests:
 Gas liquid chromatography measure of diacetyl.
 Electron capture gas liquid chromatography.
 Gas chromatography – chemical ionization mass spectrography.
 Calorimetric method of measurement of diacetyl.
Rapid test:
 Reagent impregnated VP strip.
Precautions:
 Organism like Hafnia alvei & Proteus mirabilis may give both MR & VP
positive results although VP reaction is delayed.
 Excess KOH may mask a weak VP positive reactions.
 The test should not be read after 1hr.

38. Positive:
Negative:
 Klebseilla pneumoniae
 E.coli
 Enterobacter
 Micrococcus
 Staphylococcus
 K.ozanae
 Hafinia alvei(25 +ve)
 K.rhinoscleromatis
 Hafinia alvei(37 variable)
 Y.enterocolitica 37
 Yersinia enterocolitica 25
 Listeria monocytogenes

39. Test to show ability to utilize a specific
substrate.
 Citrate utilization Test
 Malonate utilization Test

40. Citrate utilization test
 Principle: To determine the ability of an organism to utilize citrate as sole
carbon and energy source for growth and an ammonium salt as the sole
source of nitrogen.
 Citrate is a salt of citric acid, one of the metabolites in the Krebs cycle.
 Bacteria that can use citrate ,can also extract nitrogen from the ammonium
salt with the production of ammonia, leading to alkalinization of the medium,
from conversion of the NH3²⁺ to NH4OH.
Sodium citrate
Bromothymol blue
(green)
ph 6.9
citritase
Alk.metabolic products-
Bromothymol blue
(blue)
ph7.6
ph

41. Koser’s medium (Ph 6.9)
Simmon’s citrate medium (ph 6.9)
Sodium chloride - 5 g
Magnesium sulphate - 0.2 g
Ammonium dihydrogen ph. – 1 g
Potassium dihydrogen ph. – 1 g
Sodium citrate – 5 g
Distilled water – 1 L
Koser’s medium – 1 L
Agar - 20 g
Bromothymol blue 0.2 % - 40 ml
Quality control:
Positive: Enterobacter aerogenes
Negative: E.coli

42. Procedure: Inoculate pure culture of the test organism into Koser’s medium /
streak on citrate agar tube , incubate at 37 C for 24 - 48 hrs.
Interpretation :
 Koser’s medium
Positive: Turbidity
Negative: No Turbidity
 Simmon’s citrate medium
Positive: Blue colour and streak of growth.
Negative: Original green colour and no colour.
A positive test may also be read without a blue colour if there is visible colony
growth along the inoculation streak line & it can be confirmed by inoculating
tube for additional 24 hrs.

43. Precaution:
 For koser’s medium a positive test should be subcultured into a second tube
to eliminate false positive due to an excessive initial inoculum.
 Avoid using a large inoculum to streak the slant; an inoculum that is too
heavy may result in a false-positive test.
Positive
Klebsiella
Salmonella typhimurium
Citrobacter
Proteus
Enterobacter
Pseudomonas
Providencia
Serratia
Morganella
Negative
E.coli
Salmonella typhi
Edwardsiella
Hafnia

44. Malonate utilization test
Principle: Determines the ability of an organism to utilize sodium malonate
as its sole source of carbon.
If an organism is capable of utilizing sodium malonate as its sole carbon
source, and the same time utilizes ammonium sulphate as its nitrogen source,
an alkaline reaction is produced by the formation of NaOH , resulting in a
colour change from green to blue in medium.
It is widely used for the differentiation of Enterobacter and Escherichia coli
based on the use of malonate.
Quality control:
Positive : Enterobacter aerogenes
Negative: Yersinia ruckeri

45. Malonate agar: (ph7.4)
Yeast extract-1g
Ammonium sulphate-2g
Dipotassium dihydrogen sulphate-0.6g
Potassium dihydrogen phasphate-0.4g
Sodium chloride-2g
Sodium malonate-3g
Glucose-0.25g
Bromothymol blue-0.025g
Distilled water-1L
Agar-25g
Procedure: Inoculate pure culture of the test organism into medium ,
incubate at 37 C for 48 hrs.

46. Interpretation:
Positive: Deep blue
Negative: Green
Positive
Negative
Enterobacter
K.pneumoniae
Arizona
C.koseri
Escherichia
K.ozaenae
Serratia
C.amalonaticus
Salmonella
P.vulgaris
Precaution:


Reaction should be read after 48 hrs.
Some bacteria produces slight alkalinity,it is useful
to compare the test to an uninoculated tube.

47. Test for metabolism of protein and amino acids
 Indole test
 Gelatin liquefaction
 Phenylalanine deaminase test
 Amino acid decarboxylase and arginine dihydrolase tests

48. Indole test
Principle:
To determine the ability of the organism to split Indole from the tryptophan
molecule.
Biochemistry:
Indole is one of the metabolic degradation product of the amino acid
tryptophan.
Bacteria that possess the enzyme tryptophanase are capable of hydrolyzing
and deaminating tryptophan with the production of Indole, Pyruvic acid and
ammonia.
Indole is then tested for by a colorimetric reaction with p-dimethylaminobenzaldehyde (active chemical in Kovac / Ehrlich reagent) resulting in
formation of red complex.

49. Media & Reagents:
Tryptophan 1%
Peptone – 2g
Sodium chloride – 0.5 g
Distilled water – 100 ml
Ehrlich’s(other GNB)
p - dimethyl aminobenzaldehyde - 2g
Abs. ethyl alcohol – 190 ml
Conc. HCL – 40 ml
Kovac’s(Enterobacteriaceae)
p - dimethyl aminobenzaldehyde – 2g
Pure amyl or Iso amyl alcohol – 150 ml
Conc.HCL – 50 ml
Quality control:
Positive – Elizabethkingia meningoseptica
Negative – CDC group EO-2
Positive – E.coli
Negative – K.pneumoniae

50. Procedure:
Inoculate tryptophan broth with the test organism
and incubate for 18 to 24 hrs at 37 c.
Add 15 drops of Indole reagent down the inner
wall of the tube.
If Ehrlich reagent is used it should be preceded
by addition of 1 ml of xylene, this is not
necessary for Kovac reagent.
Intrepretation:
Positive:Development of bright fuchsia red color
at the interface of the interface of the
reagent and the broth within seconds after
adding the reagent .
Negative : No colour change after the addition
of the reagent

51. Positive
Negative
 E.coli
 Salmonella
 P.vulgaris
 K.pneumoniae
 P.penneri
 Enterobacter
 K.oxytoca
 P.mirablis
 K.ornitholytica
 Pseudomonas
 Citrobacter diversus
 Hafnia
 Citrobacter amalonaticus
 Serratia
 E.tarda
 Providencia
 Morganella morgagni
 Morgenella
 S.dysenteriae sero type 2
 S.sonnei
 S.dysenteriae sero type 1

52. Other media which can be used for indole production
Sulphide indole motility agar
Motility indole ornithine agar
Indole rapid tests
Indole spot test(filter paper)
Indole spot test for anaerobic bacteria
Indole microtechnique(indole test strip)
Precautions
Medium containing glucose should not be used

53. Gelatin liquefaction / Hydrolysis
Principle:
 Determines the ability of the organism to produce the proteolytic enzyme
(gelatinases) that liquefy gelatin.
 Gelatinases hydrolyses gelatin into polypeptides and individual amino acids.
 It destroy the structure of gelatin(incorporated into the media ,is free of
preservatives and heavy metals) and converts semisolid agar into a liquid.
Quality control :
Positve : P.vulgaris
Negative: Enterobacter aerogenes

54. Nutrient gelatin (ph-6.8)
Pancreatic digest of gelatin – 5 g
Beef extract – 3 g
Gelatin – 120 g
Distilled water – 1 L
Gelatin,0.4 %(ph-7.0)
Gelatin – 40 g
Distilled water – 1 L
Procedure :



Inoculate a tube of solidified (refrigerated) nutrient gelatin by stab
technique.
Incubate the inoculated tube and a control gelatin tube at 37º C at which
temperature ,the gelatin will liquefy.
At the end of each 24-hour incubation period, place the inoculated tube and
the control tube of liquefied gelatin in a refrigerator, for a sufficient length
of time (2 week) to determine whether digestion of gelatin has occurred.

55. Interpretation:
Positive test : If a portion of gelatin liquefies.
Negative test : If the gelatin remains solid.
Positive
Negative
Bacillus spp.
Staphylococcus
P.vulgaris
P.mirabilis
Enterobacter cloacae
Clostridium perfringens
Pseudomonas
Serratia
Salmonella
B.fastidiosus
Morganella
Providentia spp.
E.coli
Klebsiella
Precaution:
Tube should not be disturbed.
A gelatin conc. of 12-15 % may inhibit growth of some microorganisms .

56. Phenylalanine deaminase test
Principle: Determines the ability of the organism to deaminate phenylalanine
with the production of phenyl pyruvic acid , which will react with
ferric salt to give green colour.
Ferric chloride acts a chelating agent and combines with the
phenyl pyruvic acid ( end product of deamination ).
PPA is a keto acid and forms a green colour in the presence of
ferric chloride in the tube.
Quality control :
Positive: P.vulgaris
Negative : E.coli

57. Phenylalanine agar medium
(ph-7.4)
10%ferric chloride,acidified
Yeast extract – 3 g
DL -phenylalanine – 2g
Disodium hydrogen phosphate – 1 g
Sodium chloride – 5 g
Agar – 12 g
Distilled water – 1 L
D.w -97.5ml
Conc.HCL-2.5ml
Ferric chloride-12g
Procedure :
Inoculate medium with the test organism (BHI broth) and incubate for 1824hrs at 37 c.
Add 4-5 drops of aqueous ferric chloride to the slant.

58. Interpretation:
Positive: Green colour develops on slant.
Negative: Slant remains original colour.
Positive
Negative
Proteus
Morganella
Providencia
E.Cloacae
Serratia
Hafnia
E.coli
Klebsiella
Salmonella
Shigella
Precaution: Test should be interpreted within 5 min.

59. Decarboxylase Test (Moeller’s method)
Principle:
Determines the enzymatic ability of an organism to decarboxylate or hydrolyze
an amino acid to form an amine with the liberation of carbon dioxide.
The production of these decarboxylases is induced by a low ph and as
result of their reaction ph rises to neutrality or above .
The lysine and ornithine reaction are truly decarboxylases test but the arginine
reaction is more correctly recognized now as a dihydrolase test.
Quality control:
Positive
Negative
Lysine –
Ornithine Arginine Base -
E.cloacae
K.pneumoniae
K.pneumoniae
K.pneumoniae
K.pneumoniae
E.cloacae
E.cloacae

60. 1) Moeller Decarboxylase Broth (Control) (pH 5.2) / Agar (3 g)
Peptic Digest of Animal Tissue - 5 g
Beef Extract - 5 g
Bromcresol Purple - 5 ml
Glucose - 0.5 g
Cresol Red – 2.5 ml
Pyridoxal - 5 g
Distilled water – 1 L
(2) Moeller Arginine Dihydrolase Broth:
Same as (1) with the addition of 10.0 g of L-Arginine HCl.
(3) Moeller Lysine Decarboxylase Broth:
Same as (1) with the addition of 10.0 g of L-Lysine HCl.
(4) Moeller Ornithine Decarboxylase Broth:
Same as (1) with the addition of 10.0 g of L-Ornithine HCl.

61. Procedure :
Inoculate each of the three decarboxylase
broths / agar medium with the test organism
(BHI broth), add 4 mm layer of sterile mineral
oil and incubate for 4 days (glucose fermenting
organisms), 7 days (glucose non-fermenting
organisms) at 37 c.
Interpretation :
Positive: Alkaline (Purple) colour change
compared with the colour tube.(ph 6.8)
Negative : No colour change or acid ( yellow)
colour in test and control tube.(ph 5.2)

62. Positive
Negative
Lysine -
E.coli , Klebsiella
Hafnia , E.aerogenes
Salmonella ,Serratia .
Citrobacter
E.cloacae, E.amnigenus
Proteus, Morgenella,
Providentia,Yersinia.
Ornithine -
E.coli , Hafnia
Morgenella, P.mirabilis
Citrobacter, Providentia
P.vulgaris , P.penneri
Arginine –
E.cloacae , P.aeruginosa
P.fluorescens , P.putida
S.anginosus , S.sanguis
Plesiomonas,E.faecalis
Proteus, Providentia
Morgenella , Serratia
Hafnia , E.aerogenes
E.avium
Precaution: Mineral oil is applied to surface of each inoculated broth medium .

63. Test for metabolism of carbohydrates and related products
 Oxidation and Fermentation test (Hugh & Leifson)
 Fermentation test

64. Oxidation / fermentation Test (Hugh & Leifson)
Principle :
To determine the oxidative or fermentative metabolism of a carbohydrate or
its non utilization
Biochemistry:
 This test employs a semi-solid medium in tubes containing the carbohydrate
under test (usually glucose) and a pH indicator.If acid is produced only at the
medium surface (aerobic), attack on the sugar is oxidative.
 Oxidation is a aerobic process and bacterial oxidisers are usually strict
aerobes.
 If acid is found through out the tube including the lower layer (anaerobic)
,breakdown is fermentative.
 Fermentation is a anaerobic process and bacterial fermenters of
carbohydrates are usually facultative anaerobes.

65. Medium: (ph – 7.1)
Peptone – 2g
Sodium chloride – 5 g
Di potassium hydrogen phosphate – 0.3 g
Bromothymol blue – 3 ml
Agar – 3g
Water – 1 L
The carbohydrate to be added is sterilized separately and added to
give final conc. of 1 %.
Quality control:
Fermenter
Oxidizer
E.coli
P.aeruginosa
Non utilizer
A.faecalis

66. Procedure:
Duplicate tubes of medium are inoculated by stabbing, one tube is covered with
layer of sterile melted petroleum jelly to a depth of 5 – 10 ml ;
Second left uncovered and both are incubated for 7 days at 37 C.
Results:
 Oxidising organisms, eg Pseudomonas species, produce an acid reaction in
the open tube only
 Fermenting organisms, eg Enterobacteriaceae, produce an acid reaction
throughout the medium in both tubes
 Organisms that cannot break down the carbohydrate aerobically or
anaerobically (Non utilizer), eg Alcaligenes faecalis, produce an alkaline
reaction in the open tube and no change in the covered tube
Hugh and Leifson’s medium can also be used for recording gas production
and motility

67. Fermenters
E.Coli
Staphylococcus
Stomatococcus
Vibrio
Aeromonas
Oxidizers
Pseudomonas
Micrococcus

68. Fermentation test
Principle: It determines the ability of an organism to ferment a specific
carbohydrate that is incorporated in a basal medium , there by producing acid
with or without visible gas.
Quality control:
A. Peptone medium with andrade’s indicator
Dextrose
Positive ,with gas
Positive , No gas
Negative
E.coli
S.flexneri
P.aeruginosa
B. Heart infusion broth with bromocresol purple indicator
Sorbitol
Positive
Negative
S.mutans
S.mitis

69. Fermentation Broth:
Trypticase: 1g
Carbohydrate: 0.5 g
Sodium Chloride: 0.5 g
Phenol red : 0.0189 mg
Procedure:
Inoculate each labeled carbohydrate broth with
bacterial culture.(keep uninoculated tubes as control
tubes) ,Incubate for 24 hours at 37oC.
Interpretation:
Acid production: Yellow color(ph 6.8)
Acid and Gas production: Yellow colour and gas.
Gas production can be detected by the presence of
small bubbles in the inverted Durham’s tubes.
Absence of fermentation: The broth retains the red
colour(ph8.4).

70. Precautions:
After inoculation into a particular sugar, sterilize the loop in order to
avoid cross contamination of the tube with other sugars.
Do not overheat the Phenol red Carbohydrate fermentation broth. The
overheating will result in breaking down of the molecules and form
compounds with a characteristic colour and flavour. The process is
known as caramelization of sugar (the browning of sugar).

71. Peptone medium with andrade’s
indicator (for enteric and coryneforms).
Positive – Pink with or without gas
formation in Durham tube.(ph5.5).
Negative – Growth but no change in colour.
Heart infusion broth with
bromocresol purple indicator
(streptococci and enterococci ).
Positive – yellow(ph 5.2)
Negative – Growth, but no change in
colour (ph6.8)

72. Combined tests
 Egg yolk agar; Test for lipase and lecithinase.
 Triple sugar iron agar test for H2S production/Kligler iron agar
test.

73. Egg yolk agar test
Principle :
 Lecithinase are enzyme released by bacteria that destroy animal tissues.
Lecithin is a normal component of egg yolk in EYA .
lecithinase
 Lecithovitellin




phosphorylcholine + diglyceride
Diglyceride forms a ppt in the medium, this ppt appears as a white opaque
halo surrounding the colony that produce lecithinase.
Bacterial lipase hydrolyze the breakdown of triglyceride into glycerol and
free fatty acids .
Fatty acids are insoluble and cause opacity in EYA , producing an iridescent
sheen on the colonies and surface.
Lipase is not diffusible and the reaction occurs on the surface of agar in the
immediate vicinity of the colony.

74. Quality control:
Positive – B.cereus ( lecithinase) , S.aureus (lipase)
Negative – E.coli
Egg yolk agar medium:
Nutrient agar – 85 ml
Egg yolk suspension – 15 ml
Procedure:
Streak an area of agar surface to obtain isolated colonies examine for halo
and iridescence. Incubate for 24 to 48 hrs /72 hrs for anaerobes at 37 C.

75. Interpretation:
Lecithin: use transmitted light to observe
halo.
Positive: development of a milky white
opaque halo around colony.
Negative: no halo in the medium or around
the colony.
Lipase: hold the plate on an angle with
good lightening.
Positive: development of an iridescent sheen
on the surface of the colony and the
surrounding.
Negative: no change in the medium.

76. Lecithinase positive:
Lipase positive:
B.cereus
C.perfringens
A.haemolyticum
P.fluorescens
Burkhholderia
C.sporogenes
G.vaginalis
Lecithinase negative :
Lipase negative:
C.difficile
P.putida
C.difficile
C.perfringens
Precaution:
Incubation can be required upto 2 weeks.

77. Triple sugar iron agar test
Principle:
 Bacteria that ferment any of the three sugars in the medium will produce by
products .These by-products are usually acids, which will change
the colour of the red pH-sensitive dye (phenol red) to a yellow colour.
 Triple Sugar Iron Agar (TSI) are used to determine if bacteria can ferment
glucose,sucrose or lactose and if they can produce hydrogen sulfide or other
gases.
 TSI contains three sugars: glucose, lactose and sucrose. Lactose and sucrose
occur in 10 times the concentration of glucose (1.0% versus 0.1%).
 Some bacteria utilize thiosulphate anion as a terminal electron acceptor,
reducing it to sulphide.

78.  If this occurs, the newly-formed hydrogen sulphide (H2S) reacts with ferrous
sulphate in the medium to form ferrous sulphide, which is visible as a black
precipitate.
 Blackening of the butt due to H2S production may mask the acid reaction
(yellow) in the butt. .
 Production of gases other than hydrogen suphide is indicated either by cracks
or bubbles in the media or the media being pushed away from the bottom of
the tube
Quality control:
A/A :
E.coli
K / A H2S⁺ : S.typhi
K / NC :
P.aeruginosa

79. TSI slant:
Beef extract – 3 g
Peptone – 20 g
Lactose – 10 g
Ferric citrate – 0.3 g
Sodium thiosulphate – 0.3 g
Phenol red – 12 ml
Yeast extract – 3g
Glucose – 1 g
Sucrose – 10 g
Sodium chloride – 5 g
Agar – 12 g
Distilled water – 1 L
Procedure:
Steak a heavy inoculum over the surface of the slope and stab into the butt ,
incubate at 37 C for 4 hrs.

80. Interpretation:
 If an organism ferments glucose only, the entire tube turns yellow due to the
effect of the acid produced on phenol red. Because there is a minimal amount
of glucose present in the tube, the organism quickly exhausts it and begins
oxidizing amino acids for energy. Ammonia is thus produced and the pH
rises.
 Within 24 hours the phenol red indicator reverts to its original red color on
the slant. Because TSI/KIA media is poured as a deep slant, the butt has
limited oxygen and bacteria are unable to oxidize amino acids there. The butt
thus remains yellow.
 If an organism can ferment lactose and/or sucrose, the butt and slant will
turn yellow (as they do from glucose fermentation).
 However, they remain yellow for at least 48 hours because of the high level
of acid products produced from the abundant sugar(s).

81. Reading the results on TSI enables to identify the several pathogens

82. Results (slant/butt)
Symbol
Interpretation
Red/yellow
K/A
Glucose fermentation only;
Peptone catabolized
Yellow/yellow
A/A
Glucose and lactose and/or sucrose
fermentation
Red/red
K/K
No fermentation; Peptone
catabolized
Red/no color change
K/NC
No fermentation; Peptone used
aerobically
Yellow/yellow with bubbles
A/A,G
Glucose and lactose and/or sucrose
fermentation; Gas produced
Red/yellow with bubbles
K/A,G
Glucose fermentation only; Gas
produced
Red/yellow with bubbles and
black precipitate
K/A,G, H2S
Glucose fermentation only; Gas
produced; H2S produced
Red/yellow with black precipitate
K/A, H2S
Glucose fermentation only; H2S
produced
Yellow/yellow with black
precipitate
A/A, H2S
Glucose and lactose and/or sucrose
fermentation; H2S produced
No change/no change
NC/NC
No fermentation
A=acid production; K=alkaline reaction; G=gas production; H2S=sulfur reduction

83. Organisms
ATCC™
Slant
*E.coli
*S.enterica
*S.flexneri
*P.aeruginosa
25922
14028
12022
27853
Acid
Alkaline
Alkaline
Alkaline
Butt
Gas
H2S
Acid
Acid
Acid
Alkaline
+
+/–
–
–
–
+
–
–

84. Miscellaneous test
 Detection of motility – Semi-solid agar
 Coagulase test

85. Motility testing
Principle:
Motility agar is a differential medium used to determine whether an organism
is equipped with flagella and thus capable of swimming away from a stab
mark. The results of motility agar are often difficult to interpret. Generally, if
the entire tube is turbid, this indicates that the bacteria have moved away
from the stab mark (are motile).
Quality control:
Positive : E.coli
Method:
 Hanging drop
 Semisolid agar deep
Negative:
K.pneumoniae

86. Procedure:
Hanging drop
Place 1 drop of broth culture in centre of
cover slip. Place small drop of immersion
oil on cover slip corners. Invert the cover
slip over the concavity of depression slide.
Examine with 40 X objective.
Semi-solid agar deep
Stab a culture growing on agar medium to a
depth of only 1/3rd to ½ inch in the middle
of the tube. incubate at 37 C for 7 days.
Interpretation:
Hanging drop:
Positive: organism change position with the respect to each other.
Negative : organism remain in the same relative position to other organism.
Semi-solid agar deep:
Positive: Motile organism will spread out into the medium from the site of inoculation.
Negative: Non motile organism remain at the site of inoculation .

87. Motile
Non-motile
E.coli
Pseudomonas
Salmonella spp.
Proteus
Citrobacter
Planococcus
Rhodococcus
Klebsiella
Shigella
Acinetobacter
S.gallinarum-pullorum

88. Coagulase test
Principle:
 Coagulase is an enzyme that clots blood plasma by catalyzing the conversion
of a soluble protein (fibrinogen) to an insoluble protein (fibrin), resulting in a
visible clot.
 Coagulase is present in two forms bound and free (different property)
 Bound coagulase (CF) : Is attached to bacterial cell wall and not present in
culture filtrate, fibrin strands are formed between the bacterial cells when
suspended in plasma, causing them to clump to visible aggregates.
 Free coagulase: Is a thrombin like substance present in culture filtrate. When
a suspension of coagulase producer is prepared in plasma , a visible clot
forms as the result of coagulase reacting with a serum substance (CRF) to
form the complex that in turn reacts with fibrinogen to produce the fibrin
clot.
Quality control:
Positive: S.aureus
Negative: S.epidermidis

89. Method:
Slide test
Tube test
•Place a drop of plasma (rabbit
plasma with EDTA) on a glass slide.
•Place a drop of distilled water / saline next
to the plasma drop as a control.
•Emulsify a colony in each drop, mix well.
•Rock the slide for 5-10 sec.
1)Emulsify several colonies in 0.5 ml of
rabbit plasma to give a milky suspension,
incubate at 37 C for 4 hrs.
2) Prepare 1:6 dilution of the plasma in
saline and place 1 ml diluted plasma in
test tube , emulsify a colony, incubate at
37 C upto 4 hrs.
Examine for clot formation.
Interpretation:
Slide test:
Positive : Macroscopic clumping in 10 sec or less in plasma drop and no
clumping in control drop.
Negative: No clumping in either drop.
Tube test:
Positive: Clot of any degree.
Negative: No clot.

90. Coagulase:
Positive
S.aureus
S.intermedius
Negative
S.saprophyticus
S.epidermidis
S.hominis
S.capitis
Precaution:
 Rabbit plasma is preferably used over
human plasma.
 Plasma should be sterilized.