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Fluorescence Microscopy
Under the guidance of
Prof. S. M. Prasad
Presented By
Vivek Kumar Singh
M.Sc. 3rd sem. (Botany)
What is Fluorescence Microscopy..?
A fluorescence microscope is an optical
microscope that uses fluorescence and
phosphorescence instead of, or in addition to,
reflection and absorption to study properties of
organic or inorganic substances.
Fluorescence-
Fluorescence is the emission of light by a
substance that has absorbed light or other
electromagnetic radiation.
 Phosphorescence
Phosphorescence is a specific type
of photoluminescence related to fluorescence. Unlike
fluorescence, a phosphorescent material does not
immediately re-emit the radiation it absorbs.
Discovery
British scientist Sir George G. Stokes first described
fluorescence in 1852.
He observed that the mineral fluorspar emitted red light
when it was illuminated by ultraviolet excitation.
Stokes noted that fluorescence emission always occurred
at a longer wavelength than of the excitation light.
This shift towards longer wavelength is known as
Stokes Shift.
The "fluorescence microscope" refers to any
microscope that uses fluorescence to generate an
image, whether it is a more simple set up like an
epifluorescence microscope, or
A more complicated design such as a confocal
microscope, which uses optical sectioning to get
better resolution of the fluorescent image.
On 8 October 2014, the Nobel Prize in
Chemistry was awarded to Eric Betzig,
William Moerner and Stefan Hell for "the
development of super-resolved
fluorescence microscopy," which brings
"optical microscopy into the
nanodimension".
Principle
The specimen is illuminated with light of a specific
wavelength.
Which is absorbed by the fluorophores, causing them to
emit light of longer wavelengths (i.e., of a Principle
different color than the absorbed light).
The illumination light is separated from the much weaker
emitted fluorescence through the use of a spectral
emission filter.
Dichroic filter
A dichroic filter or thin-
film filter, is a very
accurate color filter used to
selectively pass light of a
small range of colors
while reflecting other
colors.
A fluorophore is a fluorescent chemical
compound that can re-emit light upon
light excitation. Fluorophores typically
contain several combined
aromatic groups, or plane or cyclic
molecules with several π bonds.
Fluorophore
Typical components of a fluorescence
microscope are a light source, (xenon arc lamp
or mercury-vapor lamp or high-power
LEDs and lasers), the excitation filter,
the dichroic mirror and the emission filter.
Most fluorescence microscopes in use are
epifluorescence microscopes, where excitation
of the fluorophore and detection of the
fluorescence are done through the same light
path (i.e. through the objective).
These microscopes are widely used in biology
and are the basis for more advanced
microscope designs.
Epifluorescence microscopy
The majority of fluorescence microscopes, especially those used
in the life sciences, are of the epifluorescence design shown in
the diagram.
Light of the excitation wavelength is focused on the specimen
through the objective lens.
The fluorescence emitted by the specimen is focused to the
detector by the objective.
Since most of the excitation light is transmitted through the
specimen, only reflected excitatory light reaches the objective
together with the emitted light.
Light Source
Four main types of light source are used,
including xenon arc lamps or mercury-vapor lamps
with an excitation filter, lasers, and high-
power LEDs.
Lasers are mostly used for complex fluorescence
microscopy techniques, while xenon lamps, and
mercury lamps, and LEDs with a dichroic excitation
filter are commonly used for wide field
epifluorescence microscopes.
Xenon arc Lamp
A xenon arc lamp is a specialized type of gas
discharge lamp, an electric light that produces
light by passing electricity
through ionized xenon gas at high pressure.
It produces a bright white light that closely
mimics natural sunlight.
Biological fluorescent stains
Many fluorescent stains have been designed for a
range of biological molecules.
Some of these are small molecules which are
intrinsically fluorescent and bind a biological
molecule of interest. Major examples of these
are nucleic acid stains like DAPI and Hoechst.
DAPI (4',6-diamidino-2-phenylindole) is
a fluorescent stain that binds strongly to A-
T rich regions in DNA and Hoechst.
Hoechst stains are part of a family of
blue fluorescent dyes used to stain DNA
A major example of fluorescent stain is phalloidin
which is used to stain actin fibres
in mammalian cells.
There are many fluorescent molecules
called fluorophores or fluorochromes such
as fluorescein, Alexa Fluors or DyLight 488, which
can be chemically linked to a different molecule
which binds the target of interest within the sample.
References
• Wikipedia, the free encyclopedia
• https://www.microscopyu.com/.../fluorescence/intr
oduction-to-fluorescence-microsco..
Thank You

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Fluorescence Microscopy

  • 1. Fluorescence Microscopy Under the guidance of Prof. S. M. Prasad Presented By Vivek Kumar Singh M.Sc. 3rd sem. (Botany)
  • 2. What is Fluorescence Microscopy..? A fluorescence microscope is an optical microscope that uses fluorescence and phosphorescence instead of, or in addition to, reflection and absorption to study properties of organic or inorganic substances.
  • 3. Fluorescence- Fluorescence is the emission of light by a substance that has absorbed light or other electromagnetic radiation.  Phosphorescence Phosphorescence is a specific type of photoluminescence related to fluorescence. Unlike fluorescence, a phosphorescent material does not immediately re-emit the radiation it absorbs.
  • 4. Discovery British scientist Sir George G. Stokes first described fluorescence in 1852. He observed that the mineral fluorspar emitted red light when it was illuminated by ultraviolet excitation. Stokes noted that fluorescence emission always occurred at a longer wavelength than of the excitation light. This shift towards longer wavelength is known as Stokes Shift.
  • 5. The "fluorescence microscope" refers to any microscope that uses fluorescence to generate an image, whether it is a more simple set up like an epifluorescence microscope, or A more complicated design such as a confocal microscope, which uses optical sectioning to get better resolution of the fluorescent image.
  • 6. On 8 October 2014, the Nobel Prize in Chemistry was awarded to Eric Betzig, William Moerner and Stefan Hell for "the development of super-resolved fluorescence microscopy," which brings "optical microscopy into the nanodimension".
  • 7. Principle The specimen is illuminated with light of a specific wavelength. Which is absorbed by the fluorophores, causing them to emit light of longer wavelengths (i.e., of a Principle different color than the absorbed light). The illumination light is separated from the much weaker emitted fluorescence through the use of a spectral emission filter.
  • 8. Dichroic filter A dichroic filter or thin- film filter, is a very accurate color filter used to selectively pass light of a small range of colors while reflecting other colors.
  • 9. A fluorophore is a fluorescent chemical compound that can re-emit light upon light excitation. Fluorophores typically contain several combined aromatic groups, or plane or cyclic molecules with several π bonds. Fluorophore
  • 10. Typical components of a fluorescence microscope are a light source, (xenon arc lamp or mercury-vapor lamp or high-power LEDs and lasers), the excitation filter, the dichroic mirror and the emission filter.
  • 11. Most fluorescence microscopes in use are epifluorescence microscopes, where excitation of the fluorophore and detection of the fluorescence are done through the same light path (i.e. through the objective). These microscopes are widely used in biology and are the basis for more advanced microscope designs.
  • 12. Epifluorescence microscopy The majority of fluorescence microscopes, especially those used in the life sciences, are of the epifluorescence design shown in the diagram. Light of the excitation wavelength is focused on the specimen through the objective lens. The fluorescence emitted by the specimen is focused to the detector by the objective. Since most of the excitation light is transmitted through the specimen, only reflected excitatory light reaches the objective together with the emitted light.
  • 13.
  • 14.
  • 15.
  • 16. Light Source Four main types of light source are used, including xenon arc lamps or mercury-vapor lamps with an excitation filter, lasers, and high- power LEDs. Lasers are mostly used for complex fluorescence microscopy techniques, while xenon lamps, and mercury lamps, and LEDs with a dichroic excitation filter are commonly used for wide field epifluorescence microscopes.
  • 17. Xenon arc Lamp A xenon arc lamp is a specialized type of gas discharge lamp, an electric light that produces light by passing electricity through ionized xenon gas at high pressure. It produces a bright white light that closely mimics natural sunlight.
  • 18. Biological fluorescent stains Many fluorescent stains have been designed for a range of biological molecules. Some of these are small molecules which are intrinsically fluorescent and bind a biological molecule of interest. Major examples of these are nucleic acid stains like DAPI and Hoechst.
  • 19. DAPI (4',6-diamidino-2-phenylindole) is a fluorescent stain that binds strongly to A- T rich regions in DNA and Hoechst. Hoechst stains are part of a family of blue fluorescent dyes used to stain DNA
  • 20. A major example of fluorescent stain is phalloidin which is used to stain actin fibres in mammalian cells. There are many fluorescent molecules called fluorophores or fluorochromes such as fluorescein, Alexa Fluors or DyLight 488, which can be chemically linked to a different molecule which binds the target of interest within the sample.
  • 21.
  • 22. References • Wikipedia, the free encyclopedia • https://www.microscopyu.com/.../fluorescence/intr oduction-to-fluorescence-microsco..