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Seman&c	
  Media&on,	
  
ArSol	
  and	
  CIDOC-­‐CRM	
  
Xavier	
  Rodier,	
  Olivier	
  Marlet	
  
Laboratoire	
  Archéologie	
  et	
  Territoires	
  –	
  CNRS/Université	
  François-­‐Rabelais	
  -­‐	
  Tours	
  
Béatrice	
  Markhoff	
  
beatrice.markhoff@univ-­‐tours.fr	
  
Laboratoire	
  d’Informa&que	
  –	
  Université	
  François-­‐Rabelais	
  -­‐	
  Tours	
  
ARIADNE Winter School – 12-14 december 2016 – PIN, Prato
1. Semantic Mediation
1. Semantic Mediation
Data Integration
BD	
  
BD	
  
BD	
  
Source1	
  
Source2	
  
Source3	
  
Uniform	
  access	
  to	
  
distributed	
  sources	
  
Common	
  
interface	
  
XML
[Wikipedia]
[Wikipedia]
1.  Semantic Mediation
Ontologies and the Semantic Web
1.  Semantic Mediation
Ontologies and the Semantic Web
http://franz.com/agraph/support/documentation/current/agraph-introduction.html
1. Semantic Mediation
A Global Semantic Schema (or Shared Conceptual Model) to access data
[…] the CIDOC CRM solves the problem of quality
and
delivering semantically rich data integration1 […]
1 [Oldman et al. 2014]
1. Semantic Mediation
A Global Semantic Schema (or Shared Conceptual Model) to access data
[Niang et al. 2016]
1. Semantic Mediation
Toward Semantic Web Applications
SOURCES
annotations images databases
CONCEPTS
describing SOURCES
REFERENCE
ONTOLOGIES
SPARQL queriable
SOURCES
THESAURUS
MAPPING
FRAMEWORKS
X3ML
1. Semantic Mediation
Toward Semantic Web Applications
2. ArSol: Archives du Sol
Data Storage, Management, Processing, Analysis
[Husi and Rodier CAA 2008]
2. ArSol
From 1990, carefully designed, used in many applications
 
Stored	
  Data	
  
	
  
submission	
  
of	
  evidence	
  	
  
	
  
	
  
Publica&on	
  
	
  
	
  
	
  
	
  
Processing,	
  Analysis	
  
Verify	
  
procédure
étape post-fouilleterrain
échelle US zone site
US
FAITS
MURS
SEPULTURES
STRUCTURES
ENSEMBLES
PERIODES
PHASES
SEQUENCES
AGREGATIONS
Regroupement
Spatio-temporels
Regroupement
temporels
Regroupement
Spatio-fonctionnels
hSp://arsol.univ-­‐tours.fr	
  
2. ArSol
3. Semantic Interoperability for ArSol
Mapping to CIDOC-CRM
[Le Goff et al. CAA 2014]
3. Semantic Inter. for ArSol
Selection of basic archaeological information
- information common to all excavations:
features and artefacts
- retain only the data characterizing the
feature or object
E22.Man-Made Object à collected materials (artifacts)
E25.Man-Made Feature à features identified at the excavation site
3. ArSol / CIDOC-CRM
3. ArSol / CIDOC-CRM
How to map ArSol’s fields to CIDOC-CRM Entities
3. ArSol / CIDOC-CRM
CIDOC-CRM « story » of the table of features…
And for the table of artifacts
4. Mapping Implementation
[Marlet et al. CAA 2015]
4. Mapping Implementation
The aim:
DBMS
(ArSol server)
Query application
SPARQL Endpoint
OBDA
Mappings
with -ontop-
Ontology
CIDOC-CRM
(OWL/RDF)
Local client
Remote client
(VPN)
Web client
(Browser)
Web server
(ArSol web)
Source
Web client
(Web service)
OBDA: Ontology-Based Data Access
-ontop- http://ontop.inf.unibz.it/
[PrefixDeclaration]
: http://www.cidoc-crm.org/cidoc-crm/
xml: http://www.w3.org/XML/1998/namespace#
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs: http://www.w3.org/2000/01/rdf-schema#
skos: http://www3.org/2004/02/skos/core#
sci: http://www.ics.forth.gr/isl/CRMsci/
inf: http://www.ics.forth.gr/isl/CRMinf/
archaeo: http://www.ics.forth.gr/isl/CRMarchaeo/
arsol: http://arsol.univ-tours.fr/4DACTION/WFICHEWEB/
[SourceDeclaration]
sourceUri jdbc4D
connectionUrl jdbc:odbc:BaseArsol
username LAT
password ********
driverClass sun.jdbc.odbc.JdbcOdbcDriver
[MappingDeclaration]
@collection [[
mappingId MOB-G_usage-01
target arsol:imobi{CoSiUSObj} :P2_has_type arsol:imobi{CoSiUSObj}#usage .
source SELECT CoSiUSObj FROM af4mobilie
mappingId MOB-G_usage-02
target arsol:imobi{CoSiUSObj}#usage a :E55_Type .
source SELECT CoSiUSObj FROM af4mobilie
mappingId MOB-G_usage-03
target arsol:imobi{CoSiUSObj}#usage :P1_is_identified_by arsol:imobi{CoSiUSObj}#usageid .
source SELECT CoSiUSObj FROM af4mobilie
mappingId MOB-G_usage-04
target arsol:imobi{CoSiUSObj}#usageid a :E41_Appellation .
source SELECT CoSiUSObj FROM af4mobilie
mappingId MOB-G_usage-05
target arsol:imobi{CoSiUSObj}#usageid :P3_has_note "{G_usage}"^^rdfs:Literal .
source SELECT CoSiUSObj, G_usage FROM af4mobilie
]]
-ontop- OBDA file
Querying with
Protégé’s plugin
PREFIX : <http://www.cidoc-crm.org/cidoc-crm/>
SELECT ?artefact ?use
WHERE {
?artefact a :E22_Man-Made_Object; :P2_has_type ?usage.
?usage a :E55_Type; :P1_is_identified_by ?usageid.
?usageid a :E41_Appellation; :P3_has_note ?use.
FILTER (?use != "")
}
(http://www.cidoc-crm.org/cidoc-crm/)
4. Mapping Implementation
Querying from (semantic web) applications…
Future works:
- Complete mappings for ArSol
-  Another database to be queried in
the same way
-  Guidelines for other databases
-  Semantic Web applications using
those resources
Cited	
  References	
  
[Husi	
  and	
  Rodier	
  CAA	
  2008]	
  P.	
  Husi,	
  X.	
  Rodier.	
  ArSol,	
  an	
  archeological	
  data	
  processing	
  system.	
  In	
  CAA,	
  pages	
  	
  
278-­‐284,	
  2008	
  
	
  
[Le	
  Goff	
  et	
  al.	
  CAA	
  2014]	
  E.	
  Le	
  Goff,	
  O.	
  Marlet,	
  X.	
  Rodier,	
  S.	
  Curet,	
  P.	
  Husi.	
  Interoperability	
  of	
  the	
  ArSol	
  (Archives	
  
du	
  Sol)	
  database	
  based	
  on	
  the	
  CIDOC-­‐CRM	
  ontology	
  .	
  In	
  CAA,	
  2014	
  
	
  
[Marlet	
  et	
  al.	
  CAA	
  2014]	
  O.	
  Marlet,	
  ,	
  S.	
  Curet,	
  X.	
  Rodier,	
  B.	
  Bouchou-­‐Markhoff.	
  Using CIDOC CRM for
dynamically querying ArSol, a relational database, from the semantic web.	
  In	
  CAA,	
  2015	
  
	
  
[Niang	
  et	
  al.	
  2016]	
  C.	
  Niang,	
  C.	
  Marinica,	
  B.	
  Bouchou,	
  E.	
  Leboucher,	
  F.	
  Laissus,	
  O.	
  Malavergne,	
  L.	
  Bouiller,	
  C.	
  
Darrieumerlou,	
  C.	
  Capderou.	
  Suppor&ng	
  Seman&c	
  Interoperability	
  in	
  Conserva&on-­‐Restora&on	
  Domain:	
  the	
  
PARCOURS	
  project.	
  To	
  appear	
  in	
  JOCCH	
  special	
  issue	
  on	
  Digital	
  Infrastructures	
  for	
  Cultural	
  Heritage	
  
	
  
[Oldman	
  et	
  al.	
  2014]	
  Oldman,	
  D.,	
  Doerr,	
  M.,	
  de	
  Jong,	
  Gerald,	
  Norton,	
  B.,	
  Wikman,	
  T.,	
  (2014).	
  Realizing	
  Lessons	
  
of	
  the	
  Last	
  20	
  Years:	
  A	
  Manifesto	
  for	
  Data	
  Provisioning	
  &	
  Aggrega&on	
  Services	
  for	
  the	
  Digital	
  Humani&es	
  
(Posi&on	
  Paper),	
  D-­‐LIB	
  July/August	
  2014.	
  (see	
  hSp://www.dlib.org/	
  -­‐	
  July/Aug	
  2014	
  edi&on)	
  	
  
	
  
[Wache	
  et	
  al.	
  2001]	
  H.	
  Wache,	
  T.	
  V ogele,	
  U.	
  Visser,	
  H.	
  Stuckenschmidt,	
  G.	
  Schuster,	
  H.	
  Neumann,	
  and	
  S.	
  
H ubner.	
  Ontology-­‐Based	
  Integra&on	
  of	
  Informa&on	
  -­‐	
  A	
  Survey	
  of	
  Exis&ng	
  Approaches.	
  In	
  IJCAI'01	
  Workshop	
  
on	
  Ontologies	
  and	
  Informa&ons	
  Sharing,	
  pages	
  108-­‐117,2001	
  
	
  

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Béatrice Markhoff - Semantic mediation ArSol and CIDOC CRM

  • 1. Seman&c  Media&on,   ArSol  and  CIDOC-­‐CRM   Xavier  Rodier,  Olivier  Marlet   Laboratoire  Archéologie  et  Territoires  –  CNRS/Université  François-­‐Rabelais  -­‐  Tours   Béatrice  Markhoff   beatrice.markhoff@univ-­‐tours.fr   Laboratoire  d’Informa&que  –  Université  François-­‐Rabelais  -­‐  Tours   ARIADNE Winter School – 12-14 december 2016 – PIN, Prato
  • 3. 1. Semantic Mediation Data Integration BD   BD   BD   Source1   Source2   Source3   Uniform  access  to   distributed  sources   Common   interface   XML [Wikipedia] [Wikipedia]
  • 4. 1.  Semantic Mediation Ontologies and the Semantic Web
  • 5. 1.  Semantic Mediation Ontologies and the Semantic Web http://franz.com/agraph/support/documentation/current/agraph-introduction.html
  • 6. 1. Semantic Mediation A Global Semantic Schema (or Shared Conceptual Model) to access data […] the CIDOC CRM solves the problem of quality and delivering semantically rich data integration1 […] 1 [Oldman et al. 2014]
  • 7. 1. Semantic Mediation A Global Semantic Schema (or Shared Conceptual Model) to access data [Niang et al. 2016]
  • 8. 1. Semantic Mediation Toward Semantic Web Applications SOURCES annotations images databases CONCEPTS describing SOURCES REFERENCE ONTOLOGIES SPARQL queriable SOURCES THESAURUS MAPPING FRAMEWORKS X3ML
  • 9. 1. Semantic Mediation Toward Semantic Web Applications
  • 10. 2. ArSol: Archives du Sol Data Storage, Management, Processing, Analysis [Husi and Rodier CAA 2008]
  • 11. 2. ArSol From 1990, carefully designed, used in many applications
  • 12.   Stored  Data     submission   of  evidence         Publica&on           Processing,  Analysis   Verify   procédure étape post-fouilleterrain échelle US zone site US FAITS MURS SEPULTURES STRUCTURES ENSEMBLES PERIODES PHASES SEQUENCES AGREGATIONS Regroupement Spatio-temporels Regroupement temporels Regroupement Spatio-fonctionnels hSp://arsol.univ-­‐tours.fr   2. ArSol
  • 13. 3. Semantic Interoperability for ArSol Mapping to CIDOC-CRM [Le Goff et al. CAA 2014]
  • 14. 3. Semantic Inter. for ArSol Selection of basic archaeological information - information common to all excavations: features and artefacts - retain only the data characterizing the feature or object
  • 15. E22.Man-Made Object à collected materials (artifacts) E25.Man-Made Feature à features identified at the excavation site 3. ArSol / CIDOC-CRM
  • 16. 3. ArSol / CIDOC-CRM How to map ArSol’s fields to CIDOC-CRM Entities
  • 17. 3. ArSol / CIDOC-CRM CIDOC-CRM « story » of the table of features…
  • 18. And for the table of artifacts
  • 20. 4. Mapping Implementation The aim: DBMS (ArSol server) Query application SPARQL Endpoint OBDA Mappings with -ontop- Ontology CIDOC-CRM (OWL/RDF) Local client Remote client (VPN) Web client (Browser) Web server (ArSol web) Source Web client (Web service) OBDA: Ontology-Based Data Access -ontop- http://ontop.inf.unibz.it/
  • 21. [PrefixDeclaration] : http://www.cidoc-crm.org/cidoc-crm/ xml: http://www.w3.org/XML/1998/namespace# rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: http://www.w3.org/2000/01/rdf-schema# skos: http://www3.org/2004/02/skos/core# sci: http://www.ics.forth.gr/isl/CRMsci/ inf: http://www.ics.forth.gr/isl/CRMinf/ archaeo: http://www.ics.forth.gr/isl/CRMarchaeo/ arsol: http://arsol.univ-tours.fr/4DACTION/WFICHEWEB/ [SourceDeclaration] sourceUri jdbc4D connectionUrl jdbc:odbc:BaseArsol username LAT password ******** driverClass sun.jdbc.odbc.JdbcOdbcDriver [MappingDeclaration] @collection [[ mappingId MOB-G_usage-01 target arsol:imobi{CoSiUSObj} :P2_has_type arsol:imobi{CoSiUSObj}#usage . source SELECT CoSiUSObj FROM af4mobilie mappingId MOB-G_usage-02 target arsol:imobi{CoSiUSObj}#usage a :E55_Type . source SELECT CoSiUSObj FROM af4mobilie mappingId MOB-G_usage-03 target arsol:imobi{CoSiUSObj}#usage :P1_is_identified_by arsol:imobi{CoSiUSObj}#usageid . source SELECT CoSiUSObj FROM af4mobilie mappingId MOB-G_usage-04 target arsol:imobi{CoSiUSObj}#usageid a :E41_Appellation . source SELECT CoSiUSObj FROM af4mobilie mappingId MOB-G_usage-05 target arsol:imobi{CoSiUSObj}#usageid :P3_has_note "{G_usage}"^^rdfs:Literal . source SELECT CoSiUSObj, G_usage FROM af4mobilie ]] -ontop- OBDA file
  • 22. Querying with Protégé’s plugin PREFIX : <http://www.cidoc-crm.org/cidoc-crm/> SELECT ?artefact ?use WHERE { ?artefact a :E22_Man-Made_Object; :P2_has_type ?usage. ?usage a :E55_Type; :P1_is_identified_by ?usageid. ?usageid a :E41_Appellation; :P3_has_note ?use. FILTER (?use != "") } (http://www.cidoc-crm.org/cidoc-crm/)
  • 23. 4. Mapping Implementation Querying from (semantic web) applications… Future works: - Complete mappings for ArSol -  Another database to be queried in the same way -  Guidelines for other databases -  Semantic Web applications using those resources
  • 24. Cited  References   [Husi  and  Rodier  CAA  2008]  P.  Husi,  X.  Rodier.  ArSol,  an  archeological  data  processing  system.  In  CAA,  pages     278-­‐284,  2008     [Le  Goff  et  al.  CAA  2014]  E.  Le  Goff,  O.  Marlet,  X.  Rodier,  S.  Curet,  P.  Husi.  Interoperability  of  the  ArSol  (Archives   du  Sol)  database  based  on  the  CIDOC-­‐CRM  ontology  .  In  CAA,  2014     [Marlet  et  al.  CAA  2014]  O.  Marlet,  ,  S.  Curet,  X.  Rodier,  B.  Bouchou-­‐Markhoff.  Using CIDOC CRM for dynamically querying ArSol, a relational database, from the semantic web.  In  CAA,  2015     [Niang  et  al.  2016]  C.  Niang,  C.  Marinica,  B.  Bouchou,  E.  Leboucher,  F.  Laissus,  O.  Malavergne,  L.  Bouiller,  C.   Darrieumerlou,  C.  Capderou.  Suppor&ng  Seman&c  Interoperability  in  Conserva&on-­‐Restora&on  Domain:  the   PARCOURS  project.  To  appear  in  JOCCH  special  issue  on  Digital  Infrastructures  for  Cultural  Heritage     [Oldman  et  al.  2014]  Oldman,  D.,  Doerr,  M.,  de  Jong,  Gerald,  Norton,  B.,  Wikman,  T.,  (2014).  Realizing  Lessons   of  the  Last  20  Years:  A  Manifesto  for  Data  Provisioning  &  Aggrega&on  Services  for  the  Digital  Humani&es   (Posi&on  Paper),  D-­‐LIB  July/August  2014.  (see  hSp://www.dlib.org/  -­‐  July/Aug  2014  edi&on)       [Wache  et  al.  2001]  H.  Wache,  T.  V ogele,  U.  Visser,  H.  Stuckenschmidt,  G.  Schuster,  H.  Neumann,  and  S.   H ubner.  Ontology-­‐Based  Integra&on  of  Informa&on  -­‐  A  Survey  of  Exis&ng  Approaches.  In  IJCAI'01  Workshop   on  Ontologies  and  Informa&ons  Sharing,  pages  108-­‐117,2001