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Foundations in Microbiology
          Fifth Edition

                                        Talaro
                                     Chapter
                                       8

    Copyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Microbial Metabolism: The Chemical
         Crossroads of Life
             Chapter 8
Metabolism

 The sum total of all chemical
reactions & physical workings
       occurring in a cell
2 types of metabolism
• Anabolism - biosynthesis
  – building complex molecules from simple ones
  – requires energy (ATP)

• Catabolism - degradation
  – breaking down complex molecules into simple
    ones
  – generates energy (ATP)

                                     4
5
6
7
Enzyme structure
• Simple enzymes – consist of protein alone
• Conjugated enzymes or holoenzymes –
  contain protein and nonprotein molecules
  – apoenzyme –protein portion
  – cofactors – nonprotein portion
     • metallic cofactors – iron, copper, magnesium
     • coenzymes -organic molecules - vitamins


                                            8
9
Enzyme-substrate interactions




                       10
• Exoenzymes – transported extracellularly,
  where they break down large food
  molecules or harmful chemicals; cellulase,
  amylase, penicillinase
• Endoenzymes – retained intracellularly &
  function there



                                   11
12
• Constitutive enzymes – always present,
  always produced in equal amounts or at
  equal rates, regardless of amount of
  substrate; enzymes involved in glucose
  metabolism
• Induced enzymes – not constantly present,
  produced only when substrate is present,
  prevents cell from wasting resources
                                 13
14
• Synthesis or condensation reactions –
  anabolic reactions to form covalent bonds
  between smaller substrate molecules,
  require ATP, release one molecule of water
  for each bond
• Hydrolysis reactions– catabolic reactions
  that break down substrates into small
  molecules, requires the input of water
                                  15
16
Transfer reactions by enzymes
1. Oxidation-reduction reactions – transfer of
   electrons
2. Aminotransferases – convert one type of amino
   acid to another by transferring an amino group
3. Phosphotransferases – transfer phosphate groups,
   involved in energy transfer
4. Methyltransferases – move methyl groups from
   one molecule to another
5. Decarboxylases – remove carbon dioxide from
   organic acids
                                       17
Metabolic pathways




                 18
Control of enzyme activity
1. Competitive inhibition – substance that
   resembles normal substrate competes with
   substrate for active site
2. Feedback inhibition – concentration of product at
   the end of a pathway blocks the action of a key
   enzyme
3. Feedback repression – inhibits at the genetic
   level by controlling synthesis of key enzymes
4. Enzyme induction – enzymes are made only
   when suitable substrates are present
                                        19
Competitive inhibition




                   20
Energy –capacity to do work or
         cause change

• Endergonic reactions – consume energy
• Exergonic reactions – release energy




                                 21
Redox reactions
• always occur in pairs
• There is an electron donor and electron
  acceptor which constitute a redox pair
• The process salvages electrons & their
  energy.
• released energy can be captured to
  phosphorylate ADP or another compound

                                 22
Electron carriers
• resemble shuttles that are loaded and
  unloaded with electrons and hydrogen
• most carriers are coenzymes, NAD, FAD,
  NADP, coenzyme A & compounds of the
  respiratory chain




                                23
NAD reduction




                24
Electron carriers




                    25
ATP
• 3 part molecule consisting of
  – adenine – a nitrogenous base
  – ribose – a 5-carbon sugar
  – 3 phosphate groups
• Removal of the terminal phosphate releases
  energy


                                   26
ATP




      27
Phosphorylation of glucose by
            ATP




                       28
Formation of ATP
1. substrate-level phosphorylation
2. oxidative phosphorylation
3. photophosphorylation




                                     29
substrate-level phosphorylation




                        30
Catabolism of glucose
1. Glycolysis
2. Tricarboxylic acid cycle, Kreb’s cycle
3. Respiratory chain, electron transport




                                   31
Metabolic strategies
               Pathways     Final e-
               involved     acceptor      ATP yield
Aerobic        Glycolysis, O2             38
respiration    TCA, ET
Anaerobic      Glycolysis, NO3-, So4-2,   variable
respiration    TCA, ET     CO3-3


Fermentation Glycolysis     Organic       2
                            molecules
                                              32
Overview of aerobic respiration




                        33
Overview of aerobic respiration
• Glycolysis – glucose (6C) is oxidized and
  split into 2 molecules of pyruvic acid (3C)
• TCA – processes pyruvic acid and
  generates 3 CO2 molecules
• Electron transport chain – accepts electrons
  NADH & FADH, generates energy through
  sequential redox reactions called oxidative
  phosphorylation

                                    34
Glycolysis




             35
TCA cycle




            36
Electron transport system




                     37
Chemiosmosis




               38
Fermentation
• Incomplete oxidation of glucose or other
  carbohydrates in the absence of oxygen
• Uses organic compounds as terminal electron
  acceptors
• Yields a small amount of ATP
• Production of ethyl alcohol by yeasts acting on
  glucose
• Formation of acid, gas & other products by the
  action of various bacteria on pyruvic acid

                                        39
Fermentation




               40
Products of fermentation




                    41
• Many pathways of metabolism are bi-directional
  or amphibolic
• Metabolites can serve as building blocks or
  sources of energy
   – Pyruvic acid can be converted into amino acids through
     amination
   – Amino acids can be converted into energy sources
     through deamination
   – Glyceraldehyde-3-phosphate can be converted into
     precursors for amino acids, carbohydrates and fats

                                             42
43
44

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pharmaceutics

  • 1. PowerPoint to accompany Foundations in Microbiology Fifth Edition Talaro Chapter 8 Copyright The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
  • 2. Microbial Metabolism: The Chemical Crossroads of Life Chapter 8
  • 3. Metabolism The sum total of all chemical reactions & physical workings occurring in a cell
  • 4. 2 types of metabolism • Anabolism - biosynthesis – building complex molecules from simple ones – requires energy (ATP) • Catabolism - degradation – breaking down complex molecules into simple ones – generates energy (ATP) 4
  • 5. 5
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  • 8. Enzyme structure • Simple enzymes – consist of protein alone • Conjugated enzymes or holoenzymes – contain protein and nonprotein molecules – apoenzyme –protein portion – cofactors – nonprotein portion • metallic cofactors – iron, copper, magnesium • coenzymes -organic molecules - vitamins 8
  • 9. 9
  • 11. • Exoenzymes – transported extracellularly, where they break down large food molecules or harmful chemicals; cellulase, amylase, penicillinase • Endoenzymes – retained intracellularly & function there 11
  • 12. 12
  • 13. • Constitutive enzymes – always present, always produced in equal amounts or at equal rates, regardless of amount of substrate; enzymes involved in glucose metabolism • Induced enzymes – not constantly present, produced only when substrate is present, prevents cell from wasting resources 13
  • 14. 14
  • 15. • Synthesis or condensation reactions – anabolic reactions to form covalent bonds between smaller substrate molecules, require ATP, release one molecule of water for each bond • Hydrolysis reactions– catabolic reactions that break down substrates into small molecules, requires the input of water 15
  • 16. 16
  • 17. Transfer reactions by enzymes 1. Oxidation-reduction reactions – transfer of electrons 2. Aminotransferases – convert one type of amino acid to another by transferring an amino group 3. Phosphotransferases – transfer phosphate groups, involved in energy transfer 4. Methyltransferases – move methyl groups from one molecule to another 5. Decarboxylases – remove carbon dioxide from organic acids 17
  • 19. Control of enzyme activity 1. Competitive inhibition – substance that resembles normal substrate competes with substrate for active site 2. Feedback inhibition – concentration of product at the end of a pathway blocks the action of a key enzyme 3. Feedback repression – inhibits at the genetic level by controlling synthesis of key enzymes 4. Enzyme induction – enzymes are made only when suitable substrates are present 19
  • 21. Energy –capacity to do work or cause change • Endergonic reactions – consume energy • Exergonic reactions – release energy 21
  • 22. Redox reactions • always occur in pairs • There is an electron donor and electron acceptor which constitute a redox pair • The process salvages electrons & their energy. • released energy can be captured to phosphorylate ADP or another compound 22
  • 23. Electron carriers • resemble shuttles that are loaded and unloaded with electrons and hydrogen • most carriers are coenzymes, NAD, FAD, NADP, coenzyme A & compounds of the respiratory chain 23
  • 26. ATP • 3 part molecule consisting of – adenine – a nitrogenous base – ribose – a 5-carbon sugar – 3 phosphate groups • Removal of the terminal phosphate releases energy 26
  • 27. ATP 27
  • 29. Formation of ATP 1. substrate-level phosphorylation 2. oxidative phosphorylation 3. photophosphorylation 29
  • 31. Catabolism of glucose 1. Glycolysis 2. Tricarboxylic acid cycle, Kreb’s cycle 3. Respiratory chain, electron transport 31
  • 32. Metabolic strategies Pathways Final e- involved acceptor ATP yield Aerobic Glycolysis, O2 38 respiration TCA, ET Anaerobic Glycolysis, NO3-, So4-2, variable respiration TCA, ET CO3-3 Fermentation Glycolysis Organic 2 molecules 32
  • 33. Overview of aerobic respiration 33
  • 34. Overview of aerobic respiration • Glycolysis – glucose (6C) is oxidized and split into 2 molecules of pyruvic acid (3C) • TCA – processes pyruvic acid and generates 3 CO2 molecules • Electron transport chain – accepts electrons NADH & FADH, generates energy through sequential redox reactions called oxidative phosphorylation 34
  • 36. TCA cycle 36
  • 39. Fermentation • Incomplete oxidation of glucose or other carbohydrates in the absence of oxygen • Uses organic compounds as terminal electron acceptors • Yields a small amount of ATP • Production of ethyl alcohol by yeasts acting on glucose • Formation of acid, gas & other products by the action of various bacteria on pyruvic acid 39
  • 42. • Many pathways of metabolism are bi-directional or amphibolic • Metabolites can serve as building blocks or sources of energy – Pyruvic acid can be converted into amino acids through amination – Amino acids can be converted into energy sources through deamination – Glyceraldehyde-3-phosphate can be converted into precursors for amino acids, carbohydrates and fats 42
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