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Research Program Genetic Gains (RPGG) Review Meeting 2021: HTPG (2016-2020) - Project Updates By Dr Rajaguru Bohar

Shared Industrial-scale Low-density SNP Genotyping for CGIAR and Partner Breeding

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Research Program Genetic Gains (RPGG) Review Meeting 2021: HTPG (2016-2020) - Project Updates By Dr Rajaguru Bohar

  1. 1. Rajaguru Bohar HTPG – Project Coordinator R.Bohar@cgiar.org ; HTPG@cgiar.org HTPG (2016-2020) - Project Updates RP Genetic Gains meeting with DDG- R Jan 5-6, 2021 Shared Industrial-scale Low-density SNP Genotyping for CGIAR and Partner Breeding Programs Serving SSA and SA
  2. 2. Low Density (HTPG) Platform • Shared genotyping platform serving all CGIAR centers and their partner programs • Low Density KASP based SNPs Genotyping(1-200 SNPs) • $2-$2.5 per sample(10 SNPs Genotyping, DNA extraction & QC) • Trait (100+) & QC genotyping – 1500+ SNPs • Centers under the agreement: • 38+ CGIAR and NARs users to date (28 countries), • Private partners, • USDA, Embrapa, CIRAD, CSIRO,…. • Target Crops: • Wheat, Maize, Rice, Groundnut, Chickpea, Pearl Millet, Potato, Cassava, Sorghum, Cowpea, Common Bean, Soybean, Pigeon Pea, Finger Millet, Yam, Banana, Tilapia,... • Tomato, Cocoa, Coffee (soon)
  3. 3. Capacity Development and Training
  4. 4. Crop wise data points Updated as on: 2016-Q3 2020
  5. 5. Data Point and Business Volume - Summary Total Business Volume: Surpassed $2,737,224 (Circa. $1 Mio from the project) HTPG Data Points Total Data Points: Surpassed 11,244,352 Updated as on: 2016-Q3 2020
  6. 6. INDIA - NARS Indira Gandhi Krishi Vishwavidyalaya (IGKV), RAIPUR Regional Agricultural Research Station (RARS),MARUTERU Agricultural Research Station (ARS) - Bapatla ICAR- National Rice Research Institute (NRRI), Cuttack Assam Agricultural University (AAU), Jorhat ICAR- Indian Institute of Rice Research (IIRR), Hyderabad The Indian Agricultural Research Institute, New Delhi Professor Jayashankar Telangana State Agricultural University (PJTSAU), Telangana IRRI - RICE HTPG Bangladesh - NARS Bangladesh Rice Research Institute (BRRI) Philippines - NARS PhilRice INDIA - NARS ICAR-Indian Institute of Wheat & Barley Research, Karnal The Indian Agricultural Research Institute, New Delhi University Agricultural Science, Dharwad Nepal - NARS Agriculture and Forestry University, Rampur, Chitwan CIMMYT - Wheat CIP - Potato INDIA - NARS ICAR-Central Potato Research Institute, ShimlaPublic - Private - Partnership Mahindra Seeds (Hyderabad) circa 1.0 Million Data pointsICRISAT Crops INDIA >13 NARS/SAU/ARS Asia CG / NARS Partnership
  7. 7. Opportunities Challenges  Implementing common SOP  Different breeding programs/ partners at different stage  Genotyping Core Breeding budget  Resource limitation especially for NARS & SAU  Requires robust training  Backstopping & follow up  Diverse crop/region  Each crop requires unique strategies  Ploidy etc.  Logistics
  8. 8. Our Team & Contributors
  9. 9. Acknowledgments

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