5. Online Mendelian Inheritance in
Man (OMIM) catalogue (March
2010) > 1640 references to LD
• X chromosome > 316 entities
• Similar sized chromosomes
• 6 > 50 references
• 7 > 58 references
• 8 > 60 references.
Several authors > a relative
concentration of intelligence
genes on X chromosome
FXS: X-Linked LD
(Niranjan et al, 2015; Lubs et al, 2012)
Victor Mckusick
Johns Hopkins Hosp
6. X-Linked LD: >> 5%–10% of LD in
males.
FXS: 50% of X-linked LD
FXS: most common cause of LD
2nd to Trisomy 21(Rousseau et al., 1995).
Fragile X syndrome (FXS): most
described linked to LD and ASD.
Multiple FXSs:
◦ FXS-A
◦ FXS-E
◦ FXS-F
FXS: X-Linked LD
(Lubs et al, 2012)
7. FXSs: (Lubs et al, 2012)
>120 known fragile sites in the human
genome > 6 sites on X chromosome
> 3 linked to LD (Lukusa & Fryns, 2008).
FXS-A = FSX = Martin-Bell syndrome:
◦ Band Xq27.3. > CGG repeats expansion
> on the 5’ untranslated region of the
Gene (FMR1 & FMR4) > Protein (FMRP)
> classical FXS
FXS-E = FRAXE: (Gécz 2000)
◦ Band Xq27 > CCG repeats expansion >
Gene (FMR2 & FMR3) (synonym AFF2) >
Protein (???) > non-syndromic X-linked
LD
FXS-F = FRAXF:
◦ Band Xq28 > CGG repeats expansion >
Gene (???) > Protein (???) > no clear
phenotype has been established.
8. FXS: FMR1 gene
(Quartier, et al, 2017; Tabolacci, et al, 2016; Myrick et al, 2014; Vengoechea et al, 2012)
10. FXS: History: 1
(Lubs et al, 2012)
1938: Lionel Penrose first observed that more
males than females in the population have LD
(1.25:1) > X linked.
1943: Martin and Bell: described a described a
family with 11 members with X-linked LD (fragile
x symptoms) although they did not know the
cause > Martin-Bell Syndrome.
1953: Watson & Crick > DNA structure.
1969: Herbert Lubs: the first one to see the
"marker X chromosome" in LD patients.
1970: Frederick Hecht: coined the term "fragile
site“ > FXS.
1977: Grant Sutherland > Folate Deficient
Medium 199 > specific FXS test
JP Martin
Lionel Penrose
Julia Bell
11. 1983 Harrison et al > Xq27. 3 the precise
location of the fragile site.
1990s: S Warren & Colleagues > FMRP
is a selective (suppressant) mRNA-
binding protein in dendrites.
1991: Verkerk: FMR1 gene > FMRP
1993: Ashley et al > Hyper-methylation >
silencing FMR1 gene
1993: de Vries et al > A Prader-Willi-like
sub-phenotype of the FXS
1994: Bakker et al > FMR1-KO Mice
model generated.
1998: Murray et al > fragile X-associated
Premature Ovarian Failure.(also called
FXPOI)
Stephen Warren
Annemieke Verkerk
Anna Murray
FXS: History: 1
(Lubs et al, 2012)
12. 2001: Hagerman et al > Fragile
X-associated Tremor/Ataxia
Syndrome (FXTAS)
2002: Huber et al > mGluR-LTD
exaggerated in FMR1-KO Mice
2004: Bear et al > mGluR theory
of FXS.
2005: Yan et al > MPEP
improves FXS in animals.
2009: Clinical trials in humans.
Randi
J. Hagerman
FXS: History: 1
(Lubs et al, 2012)
14. Epidemiology:
(Hunter et al, 2014; a systematic review and meta-analysis)
Male FXS: 1 in 2500-4000.
Female FXS: 1 in 7000-8000.
Male carriers: 1 in 250-800
Female carriers: 1 in 130-250
Females with FXS: less LD and
less physical characteristics.
Males with FXS: more likely to be
sensitive to environmental
factors.
Mortality rate: not affected
15. FXS: The most common inherited LD.
10% of undiagnosed male LD cases
3% of undiagnosed female LD cases
The most leading genetic cause of
autism.
Second most common cause of LD
after Trisomy 21.
FXS related mild dis. e.g. dyscalculia,
dyslexia, social phobia, and ADHD >
more common than FXS related LD
FXS: Other Statistics
(Rousseau et al., 1995; Hagerman et al, 2010; Paluszkiewicz et al, 2011)
17. FXS: Aetiology
(Quartier, et al, 2017; Myrick et al, 2014; Vengoechea et al, 2012)
Full Mutation FXS (200 or more CGG repeat expansions in
FMR1):
In 99% of FXS : 200 CGG repeats expansion trigger total
Hyper-methylation of FMR1 > shut down > stop producing
FMRP > marked neurodevelopmental suppression
In 1% of FXS : Partial or full Deletion / Point Mutation /
Micro-duplication > stop producing FMRP
Premutation FXS (55-199 CGG repeats expansion):
• Increased FMR1-mRNA (2–8 times) > toxic to cells.
• Reduced FMRP > partial neurodevelopmental suppression
◦ > Different cognitive and neuropsychological difficulties
◦ > Primary Ovarian Insufficiency in females couriers (40s-50s)
◦ > Fragile X-associated Tremor/Ataxia Syndrome (FXTAS) in
male and female carriers (60s-70s)
18. FMR1 Gene & FMRP
(Grigsby, 2016; Levenga et al, 2010; Soden & Chen 2010)
Fundamental importance for a
wide variety of mammalian
species (Oostra & Chiurazzi, 2001).
Active early in foetal
development (Abitbol et al., 1993) in
brain, retina, liver, gonads, and
cartilage.
◦ RNA binding,
◦ mRNA shuttling,
◦ associating ribosomes with mRNA,
◦ DNA repair (Shi et al, 2012) >
◦ regulating normal neuronal
connectivity and plasticity (Lin 2015)
Lack of FMRP >
1. Downgraded
receptors
2. Suppression
of neuronal
transmission
3. Slow
transmission
in brain cells
4. Poor brain
development
20. Full Mutation FXS: Interactions
(Rajaratnam et al, 2017; Iossifov et al, 2015)
Degrees of LD > FMRP produced;
CCG repeat number, mosaicism &
proportion of methylation.
Physical features: 80% > 1 or more
FXS, ASD & ADHD > Molecular
aetiologies intertwined,
◦ FXS > 20% of diagnosed ASD in
Monogenic disorders.
◦ Targeted treatments of FXS >
helpful for ASD (in animals).
◦ FMRP controls the translation of
approximately 30% of the genes
associated with ASD.
21. 1- Low level of FMRP > same but milder
forms of full-mutation FXS clinical
features
2- High level ab. FMR1mRNA >
Premature death of neurones:
Toxic to sequestration of neuronal
proteins.
Higher vulnerability to toxins e.g.
alcohol and pesticides.
Intracellular calcium dysregulation
Oxidative stress,
Mitochondrial dysfunction
Chronic DNA damage repair changes
Formation of the toxic protein
FMRpolyG
3. High CGG repeats > Anticipation
Premutation-Associated Disorders
(Hagerman, 2018; Rajaratnam et al, 2017)
22. Number of
repeats
Allele
range
Phenotype Stability
<45 repeats
The most common
alleles contain 29
or 30 repeats
Normal (N) Normal
Transition to a full mutated allele has
never been reported. Extremely rare
cases of minor changes in repeat number
have been described
45–54 repeats
Intermediate
or grey-zone
allele (IA)
Normal
Possible instability upon transmission.
Very rare cases of expansion to a
premutation have been described.
Very rare cases of expansion to a full
mutation have been described in
two generations but not in one generation
55 to ∼200 repeats
without abnormal
methylation
Premutation
(P)
Risk of FXPOI for
females. Risk of
FXTAS for males
and females
Unstable upon transmission and at risk to
pass on a full mutation in one generation
when transmitted by a female. This risk is
proportional to the premutation size
>∼200 repeats
with abnormal
methylation
Full mutation
(M)
Males are affected
with FXS. ∼50% of
females are
affected with FXS
Biancalana et al, 2015
29. (2) X-Inactivation / Dosage
Compensation
(Minks et al, 2008; Migeon, 1998)
heterochromatin
Mary Frances
Lyon
30. (3) Anticipation in FXS
(Grigsby, 2016: Hagerman 2013)
The greater the
number of
trinucleotide repeats,
the greater is the
probability of
expansion of the
gene to a
premutation or full
mutation allele.
These expansions
are most likely to
occur during female
31. (4) FXS: Mosaic Patterns
(Rajaratnam et al, 2017)
Mosaic patterns > common in
males >
◦ Sperm mosaic: different sperms
have different sizes of the repeat
expansions.
◦ (Allele) Size mosaic:
different sizes of the repeat
expansion in different cells.
Most common form of mosaic
males.
◦ Methylation mosaic: Incomplete
methylation of a full mutation.
39. (2) Fragile X-associated
Primary Ovarian Insufficiency (FXPOI):
(Sullivan et al, 2005)
20-25% of women (40 years or less) with
permutations (and 20% 40-45y old).
Women with full mutation > same risk as
general public ∼1%.
Women with a diagnosis of ovarian
insufficiency: 2-15% have a permutation
of FXS.
Directly related to the number of CGG
repeats:
◦ Premature ovarian failure,
◦ Early menopause,
◦ Irregular menses,
◦ Decreased fertility,
◦ Elevated FSH.
41. Prader-Willi phenotype of FXS
(Muzar et al, 2018; Martínez‐Cerdeño et al, 2017)
Several cases reported
of Prader-Willi
phenotype with genetic
abnormality of FXS and
no abnormality with
15q11–13 region.
◦ Most cases > FXS full
mutation
◦ Less cases > FXS
premutation (with FXTAS
too)
42. 47 XXX karyotype
An expansion of
approximately 580
repeats in
the FRX gene on
two of her three X
chromosomes.
Prader-Willi like
phenotype of FXS
Prader-Willi phenotype in Triple X with FXS
(Vandersteen et al, 2009)
44. 1- Cytogenetic Testing:
Conventional cytogenetic testing (Chromosome Analysis), (Karyotyping)
Molecular Cytogenetics Testing via Fluorescence in-Situ Hybridization (FISH)
2- DNA/Genetic Tests: florescent/ radioactive probes
2-a- Specific (single) genetic text
Southern Blot Analysis,
Polymerase Chain Reaction (PCR):
◦ The Rapid Chain Reaction-Based Screening test
2-b- Arrays (high number group test):
Microarray Comparative Genomic Hybridization (aCGH) Testing
Single-nucleotide-polymorphism (SNP) genotyping array
Next-generation Sequencing (NGS)
3- Immunocytochemical testing:
◦ The Methylation-Specific Melting Curve Analysis (MS-MCA):
◦ Willemsen Antibody Test.
Genetic Tests
(Vissers et al, 2016)
45. Cytogenetic Testing:
Chromosome Analysis
(Karyotyping): a light
microscopy cytogenetic analysis
to examine metaphase or
prometaphase chromosomes
for structural anomalies.
Fluorescence in-Situ
Hybridization (FISH): (largely
replaced by microarrays) > uses
labelled DNA probes to identify
sub-microscopic structural
chromosome anomalies—
microdeletions and
microduplications.
1- Conventional Cytogenetic Tests
(Vissers et al, 2016; Sharkey et al, 2005)
46. 2-a- DNA/Genetic Tests:
PCR (Polymerase Chain Reaction):
(Sherman et al, 2005)
Flanking primers > amplify DNA
fragments of repeat region >
approximate number of repeats
present in each allele.
Advantages:
Accurate sizing of alleles in the
normal, “gray zone,” & small
premutation in a relatively short time.
Assay not affected by X-chromosome
inactivation.
Disadvantages:
Large mutations are more difficult to
amplify.
No information about FMR1
methylation status
47. 2-a- DNA/Genetic Tests:
Southern Blot Analysis
(Sherman et al, 2005)
A methylation-sensitive
restriction enzyme > distinguish
between methylated &
unmethylated alleles.
Advantages:
A crude measure of size of
repeat segments
An accurate assessment of
methylation status.
Disadvantages:
More labour intensive than
PCR.
Requires larger quantities of
genomic DNA.
Inactivation of X-chromosome
48. Array CGH compares DNA
from two differentially labelled
genomes; a test (or patient) vs
a reference (or control).
Array CGH is similar to FISH
experiment but over hundreds
or thousands of loci and with a
much higher resolution.
Depending on their design
(whole-genome arrays vs
targeted arrays), they have the
potential to detect the majority
of microscopic and sub-
microscopic chromosomal
2-b- DNA/Genetic Tests:
Microarray Comparative Genomic Hybridization (aCGH) Testing
(High number group genetic tests):
(Sherman et al, 2005; Karampetsou et al, 2014; Bejjani & Shaffer 2006)
49. 2-c- Immunocytochemical (ICC) Testing:
(Haenfler et al, 2018; Burry 2011)
ICC is used to
anatomically visualize
localization of a protein
or antigen in cells by use
of a “primary
antibody” that binds to it.
The primary antibody
allows visualization of
the protein under
a fluorescence
microscope when it is
bound by a ”secondary
antibody” that has a
50. Array tests: Molecular
Karyotyping, Multi-Gene Panel &
Exome Sequencing > in 337 ID
subjects vs standard clinical
evaluation.
Standard clinical evaluation >
16% of cases (54/337) but only
70% of these (38/54) confirmed.
Genomic > likely diagnosis in
58% (n=196) > exome
sequencing: 60%.
Adoption of genomics as a first-
Routine Genetic Tests in LD (?)
( Anazi et al, 2017)
54. • Preclinical studies using
animal models of FXS have
yielded several agents that
rescue a wide variety of
phenotypes.
• Translation of treatments,
used in animal studies, to
humans with FXS has not
yet been successful,
shedding light a variety of
limitations with both animal
models and human trial
design.
Drug Trials: Conclusion
(Berry-Kravis et al, 2018; Erickson et al, 2018; Schaefer et al, 2015; Politte et al, 2013).
56. Clinical Trials since 2002 in FXS
(Berry-Kravis et al, 2018)
(Berry-Kravis et al, 2018)
57. Drug Development for FXS:
Lessons Learned: Oversimplistic Thinking
(Zafarullah & Tassone, 2019; Berry-Kravis et al, 2018)
Problems with
Design,
Assessment tools,
Evaluating cognition,
Evaluating disease
modification,
Regulatory framework for
RCTs in children
Preclinical safety
requirements
Selection of clinical end
points
59. Rescue of Fragile X Syndrome Neurons by DNA Methylation
Editing of the FMR1 Gene (Liu et al 2018)
Recently developed DNA methylation editing tools to reverse hyper-
methylation event.
Targeted demethylation of the CGG expansion by dcas9-
Tet1/single guide RNA (sgrna) switched the heterochromatin status
of the upstream FMR1 promoter to an active chromatin state,
restoring a persistent expression of FMR1 in FXS ipscs.
Neurons derived from methylation-edited FXS ipscs rescued the
electrophysiological abnormalities and restored a wild-
type phenotype upon the mutant neurons.
FMR1 expression in edited neurons was maintained in vivo after
engrafting into the mouse brain.
Finally, demethylation of the CGG repeats in post-mitotic FXS
neurons also reactivated FMR1.
Demethylation of the CGG expansion is sufficient
for FMR1 reactivation, suggesting potential therapeutic strategies for
FXS.
61. FXS: a possible model for future psychiatry
RDoC studies (NIMH) (Insel et al, 2010).
ROAMER studies (Horizon 2020) (Schumann et al, 2014).
Future:
Less concepts like “Autistic Spectrum Disorders”
More concepts like “FXS Spectrum Disorders”
63. Current thinking: [e.g. NIMH RDoC studioes (Insel et al, 2010),
ROAMER studies (Horizon 2020) (Schumann et al, 2014), CAN-MIND
(Rizvi et al, 2018): most psychiatrist disorders can
become as specific as FXS leading to more
objective and specific psychiatric management .
Needs:
◦ Futuristic thinking and planning.
◦ Restructuring of psychiatry as a discipline
◦ Restructuring of training in psychiatry.
◦ Restructuring of services.
◦ More resources.
Advances then will pay back very well.
FXS: a possible model for future
psychiatry
Mechanisms of inheritable epigenetics. Mammalian gene expression is tightly controlled by genetic as well as epigenetic mechanisms. Epigenetics modifies the phenotype without altering the genotype of a cell. Shown here are some well-defined epigenetic mechanisms that include histone modifications, DNA methylation, and the noncoding RNA-mediated modulation of gene expression. Some of these mechanisms are inheritable through successive cell divisions and contribute to the maintenance of cellular phenotype. Recent studies show that the association of components of transcriptional regulatory machinery with target genes on mitotic chromosomes is a novel epigenetic mechanism that poises genes involved in key cellular processes, such as growth, proliferation, and lineage commitment, for expression in progeny cells.