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Bio::Phylo - phyloinformatic analysis using perl

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Rutger Vos
Rutger Vos

Bio::Phylo is a BioPerl-compatible phyloinformatics toolkit that implements EvoIO concepts and technologies. It can be used for phyloinformatics workflows and data transformation, PhyloWS servers and clients, visualization, and analysis and simulation of tree shapes. Future directions include tighter integration with BioPerl, extending PhyloWS functionality, and SWIG backends for other tools like HyPhy, NCL, and Beagle.

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Bio::Phylo  –        Phyloinformatic  analysis  using  Perl     Rutger  Vos  
Introduction   Bio::Phylo  is  a  BioPerl-­‐compa1ble  phyloinforma1c   toolkit  that  implements  EvoIO  concepts  and   technologies  
Use  Cases     PhyloInforma1c  workflows,   data  transforma1on     PhyloWS  servers  and   clients     Visualiza:on     Analysis  and  simula1on  of   tree  shapes  
Future  Directions     Tighter  integra1on  in  BioPerl     Extending  PhyloWS  func1onality     SWIG  backends,  e.g.  HyPhy,  NCL,  Beagle  
Learn  More     hKp://search.cpan.org/dist/Bio-­‐Phylo       Or  google  Bio::Phylo     Or  @rvosa     Computa1onal  Phyloinforma1cs:  A  BGI-­‐Shenzhen  and  NESCent   Course  (August  5-­‐17  2010)  
Acknowledgements     Jason  Caravas     Klaas  Hartmann     Mark  Jensen     Chase  Miller     Aki  Mimoto  

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Bio::Phylo - phyloinformatic analysis using perl

  • 1. Bio::Phylo  –        Phyloinformatic  analysis  using  Perl     Rutger  Vos  
  • 2. Introduction   Bio::Phylo  is  a  BioPerl-­‐compa1ble  phyloinforma1c   toolkit  that  implements  EvoIO  concepts  and   technologies  
  • 3. Use  Cases     PhyloInforma1c  workflows,   data  transforma1on     PhyloWS  servers  and   clients     Visualiza:on     Analysis  and  simula1on  of   tree  shapes  
  • 4. Future  Directions     Tighter  integra1on  in  BioPerl     Extending  PhyloWS  func1onality     SWIG  backends,  e.g.  HyPhy,  NCL,  Beagle  
  • 5. Learn  More     hKp://search.cpan.org/dist/Bio-­‐Phylo       Or  google  Bio::Phylo     Or  @rvosa     Computa1onal  Phyloinforma1cs:  A  BGI-­‐Shenzhen  and  NESCent   Course  (August  5-­‐17  2010)  
  • 6. Acknowledgements     Jason  Caravas     Klaas  Hartmann     Mark  Jensen     Chase  Miller     Aki  Mimoto