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Chapter 21
Enzymes and
Vitamins
Chapter 21
Table of Contents
Copyright © Cengage Learning. All rights reserved 2
21.1 General Characteristics of Enzymes
21.2 Enzyme Structure
21.3 Nomenclature and Classification of Enzymes
21.4 Models of Enzyme Action
21.5 Enzyme Specificity
21.6 Factors That Affect Enzyme Activity
21.7. Extremozymes
21.8 Enzyme Inhibition
21.9 Regulation of Enzyme Activity
21.10 Prescription Drugs That Inhibit Enzyme Activity
21.11 Medical Uses of Enzymes
21.12 General Characteristics of Vitamins
21.13 Water-Soluble Vitamins: Vitamin C
21.14 Water-Soluble Vitamins: The B Vitamins
21.15 Fat-Soluble Vitamins
General Characteristics of Enzymes
Section 21.1
Copyright © Cengage Learning. All rights reserved 3
• Enzymes are usually proteins that act as
biological catalysts.
• Each cell in the human body contains
thousands of different enzymes.
• Enzymes cause cellular reactions to occur
millions of times faster than corresponding
uncatalyzed reactions
• An enzyme speeds a reaction by lowering
the activation energy, changing the reaction
pathway that provides a lower energy route
for conversion of substrate to product.
• As catalysts enzymes are not consumed in
the reactions
• A few enzymes are now known to be
ribonucleic acids (RNA)
Section 21.2
Enzyme Structure
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Simple and Conjugated Enzymes
• Most enzymes are globular proteins; some are
simple proteins, others are conjugated proteins
• Simple enzyme: composed only of protein
(amino acid chains)
It is the 3o structure of the simple
enzymes that makes it biologically active
• Conjugated enzyme: has a non-protein part in
addition to a protein part.
1. apoenzyme  protein part; inactive in itself
2. cofactor /coenzyme  nonprotein organic
(coenzyme /co-substrate) or inorganic
(cofactor) moiety; the activator; loosely
bound to protein
• apoenzyme + cofactor = holoenzyme
(biologically active conjugated enzyme)
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 5
• Most commonly named with reference to their function
– type of reaction catalyzed
– identity of the substrate
• A substrate is the reactant in an enzyme-catalyzed
reaction:
– the substrate is the substance upon which the
enzyme “acts.”
– e. g., In the fermentation process, sugar is converted
to alcohol, therefore in this reaction sugar is the
substrate
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 6
Three Important Aspects of the Naming Process
1. Suffix -ase identifies it as an enzyme
– e.g., urease, sucrase, and lipase are all enzyme designations
– exception: the suffix -in is still found in the names of some
digestive enzymes, e.g., trypsin, chymotrypsin, and pepsin
2. Type of reaction catalyzed by an enzyme is often used
as a prefix
– e.g., oxidase - catalyzes an oxidation reaction,
– e.g., hydrolase - catalyzes a hydrolysis reaction
3. Identity of substrate is often used in addition to the type
of reaction
– e.g. glucose oxidase, pyruvate carboxylase, and succinate
dehydrogenase
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 7
Practice Exercise
• Predict the function of the following enzymes.
a. Maltase
b. Lactate dehydrogenase
c. Fructose oxidase
d. Maleate isomerase
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 8
Practice Exercise
• Predict the function of the following enzymes.
a. Maltase
b. Lactate dehydrogenase
c. Fructose oxidase
d. Maleate isomerase
Answers:
a. Hydrolysis of maltose;
b. Removal of hydrogen from lactate ion;
c. Oxidation of fructose;
d. Rearrangement (isomerization) of maleate ion
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 9
Six Major Classes
• Enzymes are grouped into six major classes based on the types of
reactions they catalyze
Class Reaction Catalyzed
1. Oxidoreductases Oxidation-reductions
2. Transferases Functional group transfer reactions
3. Hydrolases Hydrolysis reactions
4. Lyases
Reactions involving addition of a group to a double bond
or removal of groups to form double bonds
5. Isomerase Isomerization reactions
6. Ligases
Reactions involving bond formation coupled with ATP
hydrolysis
Section 21.3
Nomenclature and Classification of Enzymes
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Section 21.3
Nomenclature and Classification of Enzymes
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Oxidoreductase
• An oxidoreductase enzyme catalyzes an oxidation–reduction
reaction:
– oxidation and reduction reactions are always linked to one
another
– an oxidoreductase requires a coenzyme that is either oxidized
or reduced as the substrate in the reaction.
– e.g., lactate dehydrogenase is an oxidoreductase and NAD+ is
the coenzyme in this reaction.
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 12
Transferase
• A transferase is an
enzyme that catalyzes
the transfer of a
functional group from
one molecule to another
• Two major subtypes:
1. kinases - catalyze
transfer of a
phosphate group
from adenosine
triphosphate (ATP)
to a substrate
Section 21.3
Nomenclature and Classification of Enzymes
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Transferase
• A transferase is an
enzyme that catalyzes
the transfer of a
functional group from
one molecule to another
• Two major subtypes:
2. transaminases -
catalyze transfer of
an amino group to a
substrate
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 14
Hydrolase
• a hydrolase is an enzyme that catalyzes a hydrolysis reaction
• the reaction involves addition of a water molecule to a bond to cause
bond breakage
• hydrolysis reactions are central to the process of digestion:
– carbohydrases hydrolyze glycosidic bonds in oligo- and
polysaccharides
– proteases effect the breaking of peptide linkages in proteins
– lipases effect the breaking of ester linkages in triacylglycerols
Section 21.3
Nomenclature and Classification of Enzymes
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Lyase
• A lyase is an enzyme that catalyzes the addition or the removal of a
group in a manner that does not involve hydrolysis or oxidation
– dehydratase: effects the removal of the components of water to
form a double bond
– hydratase: effects the addition of the components of water to a
double bond
Section 21.3
Nomenclature and Classification of Enzymes
Copyright © Cengage Learning. All rights reserved 16
Lyase
• A lyase is an enzyme that catalyzes the addition or the removal of a
group in a manner that does not involve hydrolysis or oxidation
– decarboxylase: effects the removal of carbon dioxide from a
substrate
– deaminase: effects the removal of ammonia from a substrate
Section 21.3
Nomenclature and Classification of Enzymes
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Isomerase
• An isomerase is an enzyme that catalyzes the isomerization
(rearrangement of atoms) of a substrate in a reaction, converting it
into a molecule isomeric with itself.
racemases – conversion of D- to L- isomer or vice versa
mutases – transfer of a functional group within a molecule
Section 21.3
Nomenclature and Classification of Enzymes
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Ligase
• A ligase is an enzyme that
catalyzes the formation of a bond
between two molecules involving
ATP hydrolysis to ADP:
– ATP hydrolysis is required
because such reactions are
energetically unfavorable
– synthetases – formation of
new bond between two
substrates with participation
of ATP
– carboxylases – formation of
new bond between substrate
and carbon dioxide with
participation of ATP
Section 21.3
Nomenclature and Classification of Enzymes
Practice Exercise
To what main enzyme class do the enzymes that catalyze
the following chemical reactions belong?
Copyright © Cengage Learning. All rights reserved 19
Section 21.3
Nomenclature and Classification of Enzymes
Practice Exercise
To what main enzyme class do the enzymes that catalyze
the following chemical reactions belong?
Copyright © Cengage Learning. All rights reserved 20
Answers:
a.Transferase
b.Lyase
Section 21.4
Models of Enzyme Action
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Enzyme Active Site
• Explanations of how enzymes
function as catalysts in biochemical
systems are based on the concepts
of an enzyme active site and
enzyme-substrate complex
formation.
• The active site: relatively small part
of an enzyme’s structure that is
actually involved in catalysis:
– where substrate binds to enzyme
– formed due to folding and bending
of the protein.
– usually a “crevice like” location in
the enzyme
– some enzymes have more than one
active site
Section 21.4
Models of Enzyme Action
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Enzyme Substrate Complex
• Intermediate
reaction species
formed when
substrate binds
with the active site
• Needed for the
activity of enzyme
• Orientation and
proximity is
favorable and
reaction is fast
Section 21.4
Models of Enzyme Action
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Two Models for Substrate Binding to Enzyme
• Lock-and-Key model:
– In this model, the active site in the enzyme has a fixed, rigid
geometrical conformation
– only substrate of specific shape can bind with active site; a substrate
whose shape and chemical nature are complementary to those of the
active site can interact with the enzyme.
– fails to take into account proteins’ conformational changes to
accommodate a substrate molecule
Section 21.4
Models of Enzyme Action
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Two Models for Substrate Binding to Enzyme
• Induced Fit Model:
– substrate contact with enzyme will change the shape of the
active site
– allows small change in space to accommodate substrate (e.g.,
how a hand fits into a glove)
– the enzyme active site, although not exactly complementary in
shape to that of the substrate, is flexible enough that it can
adapt to the shape of the substrate.
Section 21.4
Models of Enzyme Action
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Two Models for Substrate Binding to Enzyme
Section 21.4
Models of Enzyme Action
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Forces That Determine Substrate Binding
• H-bonding
• Hydrophobic interactions
• Electrostatic interactions
Section 21.5
Enzyme Specificity
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• Absolute Specificity:
– an enzyme will catalyze a particular reaction for only one
substrate
– this is most restrictive of all specificities (not common)
– e.g., catalase is an enzyme with absolute specificity for
hydrogen peroxide (H2O2)
– urease absolute specificity for urea
• Stereochemical Specificity:
– an enzyme can distinguish between stereoisomers
– chirality is inherent in an active site (amino acids are chiral
compounds)
– L-amino-acid oxidase - catalyzes reactions of L-amino acids but
not of D-amino acids.
Section 21.5
Enzyme Specificity
Copyright © Cengage Learning. All rights reserved 28
• Group Specificity:
– involves structurally similar compounds that have the same
functional groups.
– e.g., carboxypeptidase: cleaves amino acids one at a time from
the carboxyl end of the peptide chain
• Linkage Specificity:
– involves a particular type of bond irrespective of the structural
features in the vicinity of the bond
– considered most general of enzyme specificities
– e.g., phosphatases: hydrolyze phosphate–ester bonds in all
types of phosphate esters
Section 21.6
Factors That Affect Enzyme Activity
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Enzyme Activity
• A measure of the rate at which enzyme converts
substrate to products in a biochemical reaction
• Four factors affect enzyme activity:
– Temperature
– pH
– Substrate concentration
– Enzyme concentration
Section 21.6
Factors That Affect Enzyme Activity
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Temperature
• Higher temperature results in
higher kinetic energy which
causes an increase in number of
reactant collisions, therefore there
is higher activity.
• Optimum temperature:
temperature at which the rate of
enzyme- catalyzed reaction is
maximum
• Optimum temperature for human
enzymes is 37ºC (body
temperature)
• Increased temperature (high
fever) leads to decreased enzyme
activity
Section 21.6
Factors That Affect Enzyme Activity
Copyright © Cengage Learning. All rights reserved 31
pH
• Drastic changes in pH can result
in denaturation of proteins
• Optimum pH: pH at which
enzyme has maximum activity
• Most enzymes have optimal
activity in the pH range of 7.0 -
7.5
• Exception: digestive enzymes
– pepsin: optimum pH = 2.0
– trypsin: optimum pH = 8.0
Section 21.6
Factors That Affect Enzyme Activity
Copyright © Cengage Learning. All rights reserved 32
Substrate Concentration
• At a constant enzyme
concentration, the enzyme activity
increases with increased
substrate concentration.
• Enzyme saturation: the
concentration at which it reaches
its maximum rate and all of the
active sites are full
• Turnover number: number of
substrate molecules converted to
product per second per enzyme
molecule under conditions of
optimum temperature and pH
Section 21.6
Factors That Affect Enzyme Activity
Copyright © Cengage Learning. All rights reserved 33
Enzyme Concentration
• Enzymes are not consumed
in the reactions they
catalyze
• At a constant substrate
concentration, enzyme
activity increases with
increase in enzyme
concentration
– the greater the enzyme
concentration, the greater
the reaction rate.
Section 21.6
Factors That Affect Enzyme Activity
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Practice Exercise
• Describe the effect that each of the following changes
would have on the rate of a reaction that involves the
substrate sucrose and the intestinal enzyme sucrase.
a. Decreasing the sucrase concentration
b. Increasing the sucrose concentration
c. Lowering the temperature to 10ºC
d. Raising the pH from 6.0 to 8.0 when the optimum pH is 6.2
Section 21.6
Factors That Affect Enzyme Activity
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Practice Exercise
• Describe the effect that each of the following changes
would have on the rate of a reaction that involves the
substrate sucrose and the intestinal enzyme sucrase.
a. Decreasing the sucrase concentration
b. Increasing the sucrose concentration
c. Lowering the temperature to 10ºC
d. Raising the pH from 6.0 to 8.0 when the optimum pH is 6.2
Answers:
a. Decrease rate
b. Increase rate
c. Decrease rate
d. Decrease rate
Section 21.6
Factors That Affect Enzyme Activity
Copyright © Cengage Learning. All rights reserved 36
Section 21.7
Extremozymes
Extremeophiles
• Organisms that thrive in extreme environments.
– Hydrothermophiles - thrive at 80o
-122o
C and high pressure.
– Acidophiles - optimal growth pH <3.0.
– Alkaliphiles – optimal growth pH >9.0.
– Halophiles – live in highly saline conditions (>0.2 M NaCl).
– Piezophiles – grow under high hydrostatic pressure.
– Cryophiles – grow at temps <15o
C.
• A microbial enzyme that is active at conditions that would inactivate human
enzymes as well as enzymes present in most other organisms.
• Etremozymes are of high interest for industrial chemists
– enzymes are heavily used in industrial processes
– industrial processes require extremes of temp, pressure, and pH.
Copyright © Cengage Learning. All rights reserved 37
Extremozyme
Section 21.7
Extremozymes
Extremozyme Applications
• Biotechnology industry – production
of enzymes for industrial
applications.
• Petroleum industry – oil well drilling
operations
• Environmental scavenging and
removal of heavy metals
• Environmental clean-up using
genetically engineered
extremophiles.
• Laundry detergents used in cold
wash cycles.
Copyright © Cengage Learning. All rights reserved 38
Section 21.8
Enzyme Inhibition
• Enzyme Inhibitor: a substance that slows down or stops
the normal catalytic function of an enzyme by binding to
it.
• Two types of enzyme inhibitors:
– Competitive Inhibitors: compete with the substrate for
the same active site
• will have similar charge & shape
– Noncompetitive Inhibitors: do not compete with the
substrate for the same active site
• binds to the enzyme at a location other than active site
Copyright © Cengage Learning. All rights reserved 39
Section 21.8
Enzyme Inhibition
Reversible Competitive Inhibition
• A competitive enzyme
inhibitor decreases enzyme
activity by binding to the
same active site as the
substrate.
• Binds reversibly to an
enzyme active site and the
inhibitor remains unchanged
(no reaction occurs)
• The enzyme - inhibitor
complex formation is via
weak interactions (hydrogen
bonds, etc.).
• Competitive inhibition can
be reduced by simply
increasing the concentration
of the substrate.
Copyright © Cengage Learning. All rights reserved 40
Section 21.8
Enzyme Inhibition
Reversible Noncompetitive Inhibition
• A noncompetitive enzyme
inhibitor decreases
enzyme activity by binding
to a site on an enzyme
other than the active site.
• Causes a change in the
structure of the enzyme
and prevents enzyme
activity.
• Increasing the
concentration of substrate
does not completely
overcome inhibition.
• Examples: heavy metal
ions Pb2+, Ag+, and Hg2+.
Copyright © Cengage Learning. All rights reserved 41
Section 21.8
Enzyme Inhibition
Irreversible Inhibition
• An irreversible enzyme inhibitor inactivates enzymes by
forming a strong covalent bond with the enzyme’s active
site.
– the structure is not similar to enzyme’s normal
substrate
– the inhibitor bonds strongly and increasing substrate
concentration does not reverse the inhibition process
– enzyme is permanently inactivated.
– e.g., chemical warfare agents (nerve gases) and
organophosphate insecticides
Copyright © Cengage Learning. All rights reserved 42
Section 21.8
Enzyme Inhibition
Copyright © Cengage Learning. All rights reserved 43
Section 21.9
Regulation of Enzyme Activity
• Enzyme activity is often regulated by the cell to conserve
energy. If the cell runs out of chemical energy, it will die
• Cellular processes continually produces large amounts
of an enzyme and plentiful amounts of products if the
processes are not regulated.
• General mechanisms involved in regulation:
– Proteolytic enzymes and zymogens
– Covalent modification of enzymes
– Feedback control regulation of enzyme activity by
various substances produced within a cell
• The enzymes regulated are allosteric enzymes
Copyright © Cengage Learning. All rights reserved 44
Section 21.9
Regulation of Enzyme Activity
Properties of Allosteric Enzymes
• All allosteric enzymes have
quaternary structure:
• Have at least two binding sites:
1. active site - where the substrate
binds lock-and-key
2. allosteric site (meaning “another
site”) - where the regulator
binds; distorts active site
• some regulators speed up
enzyme action (positive
allosterism); activators
• some regulators slow
enzyme action (negative
allosterism); inhibitors
Copyright © Cengage Learning. All rights reserved 45
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 46
Section 21.9
Regulation of Enzyme Activity
Feedback Control
• A process in which activation or inhibition of the first
reaction in a reaction sequence is controlled by a
product of the reaction sequence.
• Regulators of a particular allosteric enzyme may be:
– products of entirely different pathways of reaction
within the cell
– compounds produced outside the cell (hormones)
Copyright © Cengage Learning. All rights reserved 47
A B C D
Enzyme 1 Enzyme 2 Enzyme 3
Feedback Control
Enzyme 1 inhibited by product D
Section 21.9
Regulation of Enzyme Activity
Proteolytic Enzymes and Zymogens
• Mechanism of regulation
by production of enzymes
in an inactive forms
(zymogens).
• Zymogens, also known
as pro-enzymes, are
“turned on” at the
appropriate time and
place
– example: proteolytic
enzymes: hydrolyze
peptide bonds in proteins
Copyright © Cengage Learning. All rights reserved 48
Section 21.9
Regulation of Enzyme Activity
Covalent Modification of Enzymes
• A process in which enzyme activity is altered by
covalently modifying the structure of the enzyme
– Involves adding or removing a group from an enzyme
• Most common covalent modification - addition and
removal of phosphate group:
– phosphate group is often derived from an ATP
molecule.
– addition of the phosphate (phosphorylation) catalyzed
by a kinase enzyme
– removal of the phosphate group (dephosphorylation)
catalyzed by a phosphatase enzyme.
– phosphate group is added to (or removed from) the R
group of a serine, tyrosine, or threonine amino acid
residue in the enzyme regulated.
Copyright © Cengage Learning. All rights reserved 49
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 50
• Many common prescription drugs exert their mode of
action by inhibiting enzymes
• Examples:
– Angiotensin Converting Enzyme (ACE) inhibitors
• Management of blood pressure and other heart
conditions
– Sulfa drugs – antibiotics (antimetabolites)
– Penicillins – antibiotics
• Antibiotic: a substance that kills bacteria or inhibits its
growth
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 51
ACE Inhibitors
• Angiotensin II is an octapeptide
hormone that increases blood pressure
via constriction of blood vessels.
• ACE converts Angiotensin I to
angiotensin II in the blood.
• ACE inhibitors block ACE reaction and
thus reduce blood pressure.
– Lisinopril is an example of a ACE
inhibitor
Angiotensin I
Angiotensin II
ACE
Asp-Arg-Val-Tyr-Ile-His-Pro-Phe-His-Leu
His-Leu
+
Asp-Arg-Val-Tyr-Ile-His-Pro-Phe
ACE
inhibitors
block this
reaction
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 52
Sulfa Drugs
• Derivatives of sulfanilamide
• Sulfa drugs exhibit antimetabolite activities
– sulfanilamide is structurally similar to
PABA (p-aminobenzoic acid) which
bacteria need to produce coenzyme folic
acid
– sulfanilamide is a competitive inhibitor of
enzymes responsible for converting
PABA to folic acid in bacteria
– folic acid deficiency retards bacterial
growth and that eventually kills them
– sulfa drugs don’t affect humans because
we get folic acid pre-formed from food
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 53
Penicillins
• Bacteria have one structural feature not found in
animal cells – a cell wall.
• The bacterial cell wall precursor is a polymer of a
repeating disaccharide unit with attached polypeptide
side chains that end with a D-alanyl-D-alanine unit.
• Transpeptidase catalyzes the formation of peptide
cross links between polysaccharide strands in
bacterial cell walls
• Penicillin acts by complexing with the enzyme
transpeptidase that is responsible for cell wall
synthesis
• Selectively inhibits transpeptidase by covalent
modification of serine residue
• The structural similarity between the penicillins and
D-alanyl-D-alanine allows the antibiotic to act as
inhibitory substrates for the transpeptidase enzyme.
• Since animal cells do not have cell walls, there are
no such enzymes to be affected and penicillin has no
effect on animal cells.
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 54
Enzyme Kinetics: Michaelis – Menten
Kinetics of Enzyme Action
k1 k3
E + S ↔ ES ↔ E + P
k2 k4
Michaelis- Menten Equation::
υ = (vmax) (S)
Km + (S)
Vmax is the turnover number
When υ = ½ vmax:
Km = (S)
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 55
Enzyme Kinetics: Lineweaver –
Burke Plots
• an alternative linear
transformation of the M-M
equation
• estimation of the value of Km is
inconvenient from Michaelis
Equation plot and several more
convenient forms of the
equation have been developed.
• The reciprocal of the equation, a
linear form called the
Lineweaver – Burke plot is
used.
• 1/υ = Km + (S) / vmax (S) =
Km / vmax (S) + (S) / vmax (S) =
Km / vmax x 1 / (S) + 1 /
vmax (eqn for st. line)
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 56
Enzyme Kinetics:
Section 21.9
Regulation of Enzyme Activity
Copyright © Cengage Learning. All rights reserved 57
Enzyme Kinetics:
Competitive inhibitor: Noncompetitive inhibitor: Uncompetitive inhibitor:
- binds free E - binds free E & ES complex - binds ES complex
- reversible - reversible; irriversible - irriversible
-V
max the same - V
max decreases - V
max decreases
- Km increases - Km constant - Km decreases
Section 21.10
Prescription Drugs That Inhibit Enzyme Activity
Copyright © Cengage Learning. All rights reserved 58
– Different cells in the body produce enzymes for the same type of
reactions.
– Enzymes that catalyze the same reactions but vary slightly in structure
are called isoenzymes.
– For example, there are five isoenzymes for lactate dehydrogenase
(LDH), an enzyme that converts lactic acid to pyruvic acid.
Isoenzyme LDH1 LDH2 LDH3 LDH4 LDH5
Subunits H4 H3M H2M2 HM3 M4
Abundant in Heart Heart Kidneys Spleen Liver, skeletal muscle
kidneys kidneys, brain
brain, rbc
Clinical Applications of Enzymes
Section 21.10
Prescription Drugs That Inhibit Enzyme Activity
Copyright © Cengage Learning. All rights reserved 59
• Enzymes produced in certain organ/tissues if found in blood serum
may indicate certain damage to that organ/tissue
Clinical Applications of Enzymes
Serum Enzymes used in diagnosis of tissue damage
Organ Condition Diagnostic Enzymes
Heart Myocardial infarction Lactate dehydrogenase (LDH
1
) ; Creatine
kinase (CK
2
) ; Glutamic oxaloacetic
transaminase (GOT)
Liver Cirrhosis, carcinoma, Glutamic pyruvic transaminase (GPT) ;
Hepatitis Lactate dehydrogenase (LDH
5
) ;
Alkaline phosphatase (ALP) ; GOT
Bone Rickets, carcinoma Alkaline phosphatase (ALP)
Pancreas Pancreatic diseases Amylase ; Cholinesterase ; Lipase (LPS)
Prostate Carcinoma Acid phosphatase (ACP)
Section 21.10
Prescription Drugs That Inhibit Enzyme Activity
Copyright © Cengage Learning. All rights reserved 60
Clinical Applications of Enzymes
Section 21.2
Enzyme Structure
Copyright © Cengage Learning. All rights reserved 61
Coenzymes / Cofactors
• the water-soluble vitamins, which include all B-vitamins and Vitamin C,
act as coenzymes or coenzyme precursors
• cofactors are bound to the enzyme for it to maintain the correct
configuration at the active site
• provide additional chemically reactive functional group
Section 21.2
Enzyme Structure
Copyright © Cengage Learning. All rights reserved 62
Coenzymes / Cofactors
Section 21.2
Enzyme Structure
Copyright © Cengage Learning. All rights reserved 63
Coenzymes / Cofactors
Cofactors
=============================================================
Metal Ion Enzymes
-------------------------------------------------------------------------------------------------------------------------
Ca 2+ Thromboplastin
Cu2+ Tyrosinase, cytochrome oxidase
Fe2+ ; Fe3+ Cytochrome oxidase, catalase, dehydrogenase
Mg2+ Pyruvate kinase
Mn2+ Arginase, pyruvate carboxylase, phosphatase, succinic dehydrogenase,
glycosyl transferases, cholinesterase
K+ Pyruvate kinase
Zn2+ Carbonic anhydrase, carboxypeptidase, lactic dehydrogenase, alcohol
dehydrogenase
========================================================================
Section 21.12
General Characteristics of Vitamins
Copyright © Cengage Learning. All rights reserved 64
• Vitamin: An organic compound essential for proper functioning of the body
• Must be obtained from dietary sources because human body can’t
synthesize them in enough amounts
• Needed in micro and milligram quantities
– 1 gram of vitamin B is sufficient for 500,000 people
• Enough vitamin can be obtained from balanced diet
• Supplemental vitamins may be needed after illness
• Many enzymes contain vitamins as part of their structures - conjugated
enzymes
• Two classes of vitamins
– Water-Soluble and Fat-Soluble
• Synthetic and natural vitamins have the same function
– 13 Known vitamins
Section 21.12
General Characteristics of Vitamins
Copyright © Cengage Learning. All rights reserved 65
Section 21.12
General Characteristics of Vitamins
Copyright © Cengage Learning. All rights reserved 66
Section 21.12
General Characteristics of Vitamins
Copyright © Cengage Learning. All rights reserved 67
Vitamin C
• Humans, monkeys, apes and guinea pigs need dietary vitamins
• Co-substrate in the formation of structural protein collagen
- collagen also contains hydroxylysine and hydroxylproline.
- hydroxylation of lysine and proline in collagen formation are
catalyzed by enzymes that require ascorbic acid (Vit. C) and
iron.
- in Vit. C deficiency, hydroxylation is impaired, and the triple helix of
the collagen is not assembled properly.
- persons deprived of Vit. C develops scurvy, a disease whose
symptoms include skin lesions, fragile blood vessels, loose
teeth, and bleeding gums
• Involved in metabolism of certain amino acids
Section 21.14
Water-Soluble Vitamins: The B Vitamins
Copyright © Cengage Learning. All rights reserved 68
• Major function: B Vitamins are
components of many coenzymes
• Serve as temporary carriers of
atoms or functional groups in
redox and group transfer
reactions associated with
metabolism
• The preferred and alternative
names for the B vitamins
– Thiamin (vitamin B1)
– Riboflavin (vitamin B2)
– Niacin (nicotinic acid,
nicotinamide, vitamin B3)
– Pantothenic acid (vitamin
B5)
– Vitamin B6 (pyridoxine,
pyridoxal, pyridoxamine)
– Folate (folic acid)
– Vitamin B12 (cobalamin)
– Biotin
•
Section 21.14
Water-Soluble Vitamins: The B Vitamins
Copyright © Cengage Learning. All rights reserved 69
Section 21.15
Fat-Soluble Vitamins
Vitamins A, D, E, K
• Involved in plasma membrane processes
• More hydrocarbon like with fewer functional groups
• Occur in the lipid fractions of their sources
• Their molecules have double bonds or phenol rings, so oxidizing
agents readily attack them
• Destroyed by prolonged exposures to air or to the organic peroxides
that develop in fats and oils turning rancid.
• Because the fat-soluble vitamins are easily oxidized, they destroy
oxidizing agents (which are involved in the development of coronary
heart disease, genetic mutations, and cancer)
Copyright © Cengage Learning. All rights reserved 70
Section 21.15
Fat-Soluble Vitamins
Vitamin A
• a primary alcohol of molecular
formula C20H30O; occur only in
the animal world, where the
best sources are cod-liver oil
and other fish-liver oils, animal
liver and dairy products
• provitamin A is found in the
plant world in the form of
carotenes. Provitamins have no
vitamin activity; however, after
ingestion in the diet, -carotene
is cleaved at the central
carbon-carbon double bond to
give 2 molecules of Vit. A.
Copyright © Cengage Learning. All rights reserved 71
Section 21.15
Fat-Soluble Vitamins
Functions of Vitamin A
• Vision: in the eye- vitamin A combines with opsin protein to form the
visual pigment rhodopsin which further converts light energy into
nerve impulses that are sent to the brain.
• Regulating Cell Differentiation: a process in which immature cells
change to specialized cells with function.
– example: differentiation of bone marrow cells white blood cells
and red blood cells.
• Maintenance of the health of epithelial tissues via epithelial tissue
differentiation.
– lack of vitamin A causes skin surface to become drier and
harder than normal.
• Reproduction and Growth: in men, vitamin A participates in sperm
development. In women, normal fetal development during
pregnancy requires vitamin A.
Copyright © Cengage Learning. All rights reserved 72
Section 21.15
Fat-Soluble Vitamins
Vitamin D - Sunshine Vitamin
• The antirachitic vitamin
• Necessary for the normal
calcification of bone tissue
• It controls correct ratio of Ca and
P for bone mineralization
(hardening)
• Two forms active in the body:
Vitamin D2 and D3
• Pigment in the skin, 7-
dehydrocholesterol, is a
provitamin D; when irradiated by
the sun becomes converted to
Vit. D3
• humans exposed to sunlight year-
round do not require dietary Vit. D
Copyright © Cengage Learning. All rights reserved 73
Section 21.15
Fat-Soluble Vitamins
Vitamin E - Antisterility vitamin
• Alpha-tocopherol is the most active
biological active form of Vitamin E
• tocopherol  Greek, promoter of childbirth
• functions in the body as an antioxidant in
that it inhibits the oxidation of unsat’d fatty
acids by O2
• Primary function: Antioxidant – protects
against oxidation of other compounds
Copyright © Cengage Learning. All rights reserved 74
Section 21.15
Fat-Soluble Vitamins
Vitamin K - Antihemorrhagic vitamin
• Vit K is synthesized by
bacteria that grow in colon
• Active in the formation of
proteins involved in
regulating blood clotting
• Deficiency may occur
during the first few days
after birth, because
newborns lack the intestinal
bacteria that produce Vit. K
and because they have no
store of Vit. K (it does not
cross the placenta)
• Deficiency may also occur
following antibiotic therapy
that sterilizes the gut
Copyright © Cengage Learning. All rights reserved 75

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Chem 45 Biochemistry: Stoker Chapter 21 Enzymes & Vitamins

  • 2. Chapter 21 Table of Contents Copyright © Cengage Learning. All rights reserved 2 21.1 General Characteristics of Enzymes 21.2 Enzyme Structure 21.3 Nomenclature and Classification of Enzymes 21.4 Models of Enzyme Action 21.5 Enzyme Specificity 21.6 Factors That Affect Enzyme Activity 21.7. Extremozymes 21.8 Enzyme Inhibition 21.9 Regulation of Enzyme Activity 21.10 Prescription Drugs That Inhibit Enzyme Activity 21.11 Medical Uses of Enzymes 21.12 General Characteristics of Vitamins 21.13 Water-Soluble Vitamins: Vitamin C 21.14 Water-Soluble Vitamins: The B Vitamins 21.15 Fat-Soluble Vitamins
  • 3. General Characteristics of Enzymes Section 21.1 Copyright © Cengage Learning. All rights reserved 3 • Enzymes are usually proteins that act as biological catalysts. • Each cell in the human body contains thousands of different enzymes. • Enzymes cause cellular reactions to occur millions of times faster than corresponding uncatalyzed reactions • An enzyme speeds a reaction by lowering the activation energy, changing the reaction pathway that provides a lower energy route for conversion of substrate to product. • As catalysts enzymes are not consumed in the reactions • A few enzymes are now known to be ribonucleic acids (RNA)
  • 4. Section 21.2 Enzyme Structure Copyright © Cengage Learning. All rights reserved 4 Simple and Conjugated Enzymes • Most enzymes are globular proteins; some are simple proteins, others are conjugated proteins • Simple enzyme: composed only of protein (amino acid chains) It is the 3o structure of the simple enzymes that makes it biologically active • Conjugated enzyme: has a non-protein part in addition to a protein part. 1. apoenzyme  protein part; inactive in itself 2. cofactor /coenzyme  nonprotein organic (coenzyme /co-substrate) or inorganic (cofactor) moiety; the activator; loosely bound to protein • apoenzyme + cofactor = holoenzyme (biologically active conjugated enzyme)
  • 5. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 5 • Most commonly named with reference to their function – type of reaction catalyzed – identity of the substrate • A substrate is the reactant in an enzyme-catalyzed reaction: – the substrate is the substance upon which the enzyme “acts.” – e. g., In the fermentation process, sugar is converted to alcohol, therefore in this reaction sugar is the substrate
  • 6. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 6 Three Important Aspects of the Naming Process 1. Suffix -ase identifies it as an enzyme – e.g., urease, sucrase, and lipase are all enzyme designations – exception: the suffix -in is still found in the names of some digestive enzymes, e.g., trypsin, chymotrypsin, and pepsin 2. Type of reaction catalyzed by an enzyme is often used as a prefix – e.g., oxidase - catalyzes an oxidation reaction, – e.g., hydrolase - catalyzes a hydrolysis reaction 3. Identity of substrate is often used in addition to the type of reaction – e.g. glucose oxidase, pyruvate carboxylase, and succinate dehydrogenase
  • 7. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 7 Practice Exercise • Predict the function of the following enzymes. a. Maltase b. Lactate dehydrogenase c. Fructose oxidase d. Maleate isomerase
  • 8. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 8 Practice Exercise • Predict the function of the following enzymes. a. Maltase b. Lactate dehydrogenase c. Fructose oxidase d. Maleate isomerase Answers: a. Hydrolysis of maltose; b. Removal of hydrogen from lactate ion; c. Oxidation of fructose; d. Rearrangement (isomerization) of maleate ion
  • 9. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 9 Six Major Classes • Enzymes are grouped into six major classes based on the types of reactions they catalyze Class Reaction Catalyzed 1. Oxidoreductases Oxidation-reductions 2. Transferases Functional group transfer reactions 3. Hydrolases Hydrolysis reactions 4. Lyases Reactions involving addition of a group to a double bond or removal of groups to form double bonds 5. Isomerase Isomerization reactions 6. Ligases Reactions involving bond formation coupled with ATP hydrolysis
  • 10. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 10
  • 11. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 11 Oxidoreductase • An oxidoreductase enzyme catalyzes an oxidation–reduction reaction: – oxidation and reduction reactions are always linked to one another – an oxidoreductase requires a coenzyme that is either oxidized or reduced as the substrate in the reaction. – e.g., lactate dehydrogenase is an oxidoreductase and NAD+ is the coenzyme in this reaction.
  • 12. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 12 Transferase • A transferase is an enzyme that catalyzes the transfer of a functional group from one molecule to another • Two major subtypes: 1. kinases - catalyze transfer of a phosphate group from adenosine triphosphate (ATP) to a substrate
  • 13. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 13 Transferase • A transferase is an enzyme that catalyzes the transfer of a functional group from one molecule to another • Two major subtypes: 2. transaminases - catalyze transfer of an amino group to a substrate
  • 14. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 14 Hydrolase • a hydrolase is an enzyme that catalyzes a hydrolysis reaction • the reaction involves addition of a water molecule to a bond to cause bond breakage • hydrolysis reactions are central to the process of digestion: – carbohydrases hydrolyze glycosidic bonds in oligo- and polysaccharides – proteases effect the breaking of peptide linkages in proteins – lipases effect the breaking of ester linkages in triacylglycerols
  • 15. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 15 Lyase • A lyase is an enzyme that catalyzes the addition or the removal of a group in a manner that does not involve hydrolysis or oxidation – dehydratase: effects the removal of the components of water to form a double bond – hydratase: effects the addition of the components of water to a double bond
  • 16. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 16 Lyase • A lyase is an enzyme that catalyzes the addition or the removal of a group in a manner that does not involve hydrolysis or oxidation – decarboxylase: effects the removal of carbon dioxide from a substrate – deaminase: effects the removal of ammonia from a substrate
  • 17. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 17 Isomerase • An isomerase is an enzyme that catalyzes the isomerization (rearrangement of atoms) of a substrate in a reaction, converting it into a molecule isomeric with itself. racemases – conversion of D- to L- isomer or vice versa mutases – transfer of a functional group within a molecule
  • 18. Section 21.3 Nomenclature and Classification of Enzymes Copyright © Cengage Learning. All rights reserved 18 Ligase • A ligase is an enzyme that catalyzes the formation of a bond between two molecules involving ATP hydrolysis to ADP: – ATP hydrolysis is required because such reactions are energetically unfavorable – synthetases – formation of new bond between two substrates with participation of ATP – carboxylases – formation of new bond between substrate and carbon dioxide with participation of ATP
  • 19. Section 21.3 Nomenclature and Classification of Enzymes Practice Exercise To what main enzyme class do the enzymes that catalyze the following chemical reactions belong? Copyright © Cengage Learning. All rights reserved 19
  • 20. Section 21.3 Nomenclature and Classification of Enzymes Practice Exercise To what main enzyme class do the enzymes that catalyze the following chemical reactions belong? Copyright © Cengage Learning. All rights reserved 20 Answers: a.Transferase b.Lyase
  • 21. Section 21.4 Models of Enzyme Action Copyright © Cengage Learning. All rights reserved 21 Enzyme Active Site • Explanations of how enzymes function as catalysts in biochemical systems are based on the concepts of an enzyme active site and enzyme-substrate complex formation. • The active site: relatively small part of an enzyme’s structure that is actually involved in catalysis: – where substrate binds to enzyme – formed due to folding and bending of the protein. – usually a “crevice like” location in the enzyme – some enzymes have more than one active site
  • 22. Section 21.4 Models of Enzyme Action Copyright © Cengage Learning. All rights reserved 22 Enzyme Substrate Complex • Intermediate reaction species formed when substrate binds with the active site • Needed for the activity of enzyme • Orientation and proximity is favorable and reaction is fast
  • 23. Section 21.4 Models of Enzyme Action Copyright © Cengage Learning. All rights reserved 23 Two Models for Substrate Binding to Enzyme • Lock-and-Key model: – In this model, the active site in the enzyme has a fixed, rigid geometrical conformation – only substrate of specific shape can bind with active site; a substrate whose shape and chemical nature are complementary to those of the active site can interact with the enzyme. – fails to take into account proteins’ conformational changes to accommodate a substrate molecule
  • 24. Section 21.4 Models of Enzyme Action Copyright © Cengage Learning. All rights reserved 24 Two Models for Substrate Binding to Enzyme • Induced Fit Model: – substrate contact with enzyme will change the shape of the active site – allows small change in space to accommodate substrate (e.g., how a hand fits into a glove) – the enzyme active site, although not exactly complementary in shape to that of the substrate, is flexible enough that it can adapt to the shape of the substrate.
  • 25. Section 21.4 Models of Enzyme Action Copyright © Cengage Learning. All rights reserved 25 Two Models for Substrate Binding to Enzyme
  • 26. Section 21.4 Models of Enzyme Action Copyright © Cengage Learning. All rights reserved 26 Forces That Determine Substrate Binding • H-bonding • Hydrophobic interactions • Electrostatic interactions
  • 27. Section 21.5 Enzyme Specificity Copyright © Cengage Learning. All rights reserved 27 • Absolute Specificity: – an enzyme will catalyze a particular reaction for only one substrate – this is most restrictive of all specificities (not common) – e.g., catalase is an enzyme with absolute specificity for hydrogen peroxide (H2O2) – urease absolute specificity for urea • Stereochemical Specificity: – an enzyme can distinguish between stereoisomers – chirality is inherent in an active site (amino acids are chiral compounds) – L-amino-acid oxidase - catalyzes reactions of L-amino acids but not of D-amino acids.
  • 28. Section 21.5 Enzyme Specificity Copyright © Cengage Learning. All rights reserved 28 • Group Specificity: – involves structurally similar compounds that have the same functional groups. – e.g., carboxypeptidase: cleaves amino acids one at a time from the carboxyl end of the peptide chain • Linkage Specificity: – involves a particular type of bond irrespective of the structural features in the vicinity of the bond – considered most general of enzyme specificities – e.g., phosphatases: hydrolyze phosphate–ester bonds in all types of phosphate esters
  • 29. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 29 Enzyme Activity • A measure of the rate at which enzyme converts substrate to products in a biochemical reaction • Four factors affect enzyme activity: – Temperature – pH – Substrate concentration – Enzyme concentration
  • 30. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 30 Temperature • Higher temperature results in higher kinetic energy which causes an increase in number of reactant collisions, therefore there is higher activity. • Optimum temperature: temperature at which the rate of enzyme- catalyzed reaction is maximum • Optimum temperature for human enzymes is 37ºC (body temperature) • Increased temperature (high fever) leads to decreased enzyme activity
  • 31. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 31 pH • Drastic changes in pH can result in denaturation of proteins • Optimum pH: pH at which enzyme has maximum activity • Most enzymes have optimal activity in the pH range of 7.0 - 7.5 • Exception: digestive enzymes – pepsin: optimum pH = 2.0 – trypsin: optimum pH = 8.0
  • 32. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 32 Substrate Concentration • At a constant enzyme concentration, the enzyme activity increases with increased substrate concentration. • Enzyme saturation: the concentration at which it reaches its maximum rate and all of the active sites are full • Turnover number: number of substrate molecules converted to product per second per enzyme molecule under conditions of optimum temperature and pH
  • 33. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 33 Enzyme Concentration • Enzymes are not consumed in the reactions they catalyze • At a constant substrate concentration, enzyme activity increases with increase in enzyme concentration – the greater the enzyme concentration, the greater the reaction rate.
  • 34. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 34 Practice Exercise • Describe the effect that each of the following changes would have on the rate of a reaction that involves the substrate sucrose and the intestinal enzyme sucrase. a. Decreasing the sucrase concentration b. Increasing the sucrose concentration c. Lowering the temperature to 10ºC d. Raising the pH from 6.0 to 8.0 when the optimum pH is 6.2
  • 35. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 35 Practice Exercise • Describe the effect that each of the following changes would have on the rate of a reaction that involves the substrate sucrose and the intestinal enzyme sucrase. a. Decreasing the sucrase concentration b. Increasing the sucrose concentration c. Lowering the temperature to 10ºC d. Raising the pH from 6.0 to 8.0 when the optimum pH is 6.2 Answers: a. Decrease rate b. Increase rate c. Decrease rate d. Decrease rate
  • 36. Section 21.6 Factors That Affect Enzyme Activity Copyright © Cengage Learning. All rights reserved 36
  • 37. Section 21.7 Extremozymes Extremeophiles • Organisms that thrive in extreme environments. – Hydrothermophiles - thrive at 80o -122o C and high pressure. – Acidophiles - optimal growth pH <3.0. – Alkaliphiles – optimal growth pH >9.0. – Halophiles – live in highly saline conditions (>0.2 M NaCl). – Piezophiles – grow under high hydrostatic pressure. – Cryophiles – grow at temps <15o C. • A microbial enzyme that is active at conditions that would inactivate human enzymes as well as enzymes present in most other organisms. • Etremozymes are of high interest for industrial chemists – enzymes are heavily used in industrial processes – industrial processes require extremes of temp, pressure, and pH. Copyright © Cengage Learning. All rights reserved 37 Extremozyme
  • 38. Section 21.7 Extremozymes Extremozyme Applications • Biotechnology industry – production of enzymes for industrial applications. • Petroleum industry – oil well drilling operations • Environmental scavenging and removal of heavy metals • Environmental clean-up using genetically engineered extremophiles. • Laundry detergents used in cold wash cycles. Copyright © Cengage Learning. All rights reserved 38
  • 39. Section 21.8 Enzyme Inhibition • Enzyme Inhibitor: a substance that slows down or stops the normal catalytic function of an enzyme by binding to it. • Two types of enzyme inhibitors: – Competitive Inhibitors: compete with the substrate for the same active site • will have similar charge & shape – Noncompetitive Inhibitors: do not compete with the substrate for the same active site • binds to the enzyme at a location other than active site Copyright © Cengage Learning. All rights reserved 39
  • 40. Section 21.8 Enzyme Inhibition Reversible Competitive Inhibition • A competitive enzyme inhibitor decreases enzyme activity by binding to the same active site as the substrate. • Binds reversibly to an enzyme active site and the inhibitor remains unchanged (no reaction occurs) • The enzyme - inhibitor complex formation is via weak interactions (hydrogen bonds, etc.). • Competitive inhibition can be reduced by simply increasing the concentration of the substrate. Copyright © Cengage Learning. All rights reserved 40
  • 41. Section 21.8 Enzyme Inhibition Reversible Noncompetitive Inhibition • A noncompetitive enzyme inhibitor decreases enzyme activity by binding to a site on an enzyme other than the active site. • Causes a change in the structure of the enzyme and prevents enzyme activity. • Increasing the concentration of substrate does not completely overcome inhibition. • Examples: heavy metal ions Pb2+, Ag+, and Hg2+. Copyright © Cengage Learning. All rights reserved 41
  • 42. Section 21.8 Enzyme Inhibition Irreversible Inhibition • An irreversible enzyme inhibitor inactivates enzymes by forming a strong covalent bond with the enzyme’s active site. – the structure is not similar to enzyme’s normal substrate – the inhibitor bonds strongly and increasing substrate concentration does not reverse the inhibition process – enzyme is permanently inactivated. – e.g., chemical warfare agents (nerve gases) and organophosphate insecticides Copyright © Cengage Learning. All rights reserved 42
  • 43. Section 21.8 Enzyme Inhibition Copyright © Cengage Learning. All rights reserved 43
  • 44. Section 21.9 Regulation of Enzyme Activity • Enzyme activity is often regulated by the cell to conserve energy. If the cell runs out of chemical energy, it will die • Cellular processes continually produces large amounts of an enzyme and plentiful amounts of products if the processes are not regulated. • General mechanisms involved in regulation: – Proteolytic enzymes and zymogens – Covalent modification of enzymes – Feedback control regulation of enzyme activity by various substances produced within a cell • The enzymes regulated are allosteric enzymes Copyright © Cengage Learning. All rights reserved 44
  • 45. Section 21.9 Regulation of Enzyme Activity Properties of Allosteric Enzymes • All allosteric enzymes have quaternary structure: • Have at least two binding sites: 1. active site - where the substrate binds lock-and-key 2. allosteric site (meaning “another site”) - where the regulator binds; distorts active site • some regulators speed up enzyme action (positive allosterism); activators • some regulators slow enzyme action (negative allosterism); inhibitors Copyright © Cengage Learning. All rights reserved 45
  • 46. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 46
  • 47. Section 21.9 Regulation of Enzyme Activity Feedback Control • A process in which activation or inhibition of the first reaction in a reaction sequence is controlled by a product of the reaction sequence. • Regulators of a particular allosteric enzyme may be: – products of entirely different pathways of reaction within the cell – compounds produced outside the cell (hormones) Copyright © Cengage Learning. All rights reserved 47 A B C D Enzyme 1 Enzyme 2 Enzyme 3 Feedback Control Enzyme 1 inhibited by product D
  • 48. Section 21.9 Regulation of Enzyme Activity Proteolytic Enzymes and Zymogens • Mechanism of regulation by production of enzymes in an inactive forms (zymogens). • Zymogens, also known as pro-enzymes, are “turned on” at the appropriate time and place – example: proteolytic enzymes: hydrolyze peptide bonds in proteins Copyright © Cengage Learning. All rights reserved 48
  • 49. Section 21.9 Regulation of Enzyme Activity Covalent Modification of Enzymes • A process in which enzyme activity is altered by covalently modifying the structure of the enzyme – Involves adding or removing a group from an enzyme • Most common covalent modification - addition and removal of phosphate group: – phosphate group is often derived from an ATP molecule. – addition of the phosphate (phosphorylation) catalyzed by a kinase enzyme – removal of the phosphate group (dephosphorylation) catalyzed by a phosphatase enzyme. – phosphate group is added to (or removed from) the R group of a serine, tyrosine, or threonine amino acid residue in the enzyme regulated. Copyright © Cengage Learning. All rights reserved 49
  • 50. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 50 • Many common prescription drugs exert their mode of action by inhibiting enzymes • Examples: – Angiotensin Converting Enzyme (ACE) inhibitors • Management of blood pressure and other heart conditions – Sulfa drugs – antibiotics (antimetabolites) – Penicillins – antibiotics • Antibiotic: a substance that kills bacteria or inhibits its growth
  • 51. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 51 ACE Inhibitors • Angiotensin II is an octapeptide hormone that increases blood pressure via constriction of blood vessels. • ACE converts Angiotensin I to angiotensin II in the blood. • ACE inhibitors block ACE reaction and thus reduce blood pressure. – Lisinopril is an example of a ACE inhibitor Angiotensin I Angiotensin II ACE Asp-Arg-Val-Tyr-Ile-His-Pro-Phe-His-Leu His-Leu + Asp-Arg-Val-Tyr-Ile-His-Pro-Phe ACE inhibitors block this reaction
  • 52. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 52 Sulfa Drugs • Derivatives of sulfanilamide • Sulfa drugs exhibit antimetabolite activities – sulfanilamide is structurally similar to PABA (p-aminobenzoic acid) which bacteria need to produce coenzyme folic acid – sulfanilamide is a competitive inhibitor of enzymes responsible for converting PABA to folic acid in bacteria – folic acid deficiency retards bacterial growth and that eventually kills them – sulfa drugs don’t affect humans because we get folic acid pre-formed from food
  • 53. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 53 Penicillins • Bacteria have one structural feature not found in animal cells – a cell wall. • The bacterial cell wall precursor is a polymer of a repeating disaccharide unit with attached polypeptide side chains that end with a D-alanyl-D-alanine unit. • Transpeptidase catalyzes the formation of peptide cross links between polysaccharide strands in bacterial cell walls • Penicillin acts by complexing with the enzyme transpeptidase that is responsible for cell wall synthesis • Selectively inhibits transpeptidase by covalent modification of serine residue • The structural similarity between the penicillins and D-alanyl-D-alanine allows the antibiotic to act as inhibitory substrates for the transpeptidase enzyme. • Since animal cells do not have cell walls, there are no such enzymes to be affected and penicillin has no effect on animal cells.
  • 54. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 54 Enzyme Kinetics: Michaelis – Menten Kinetics of Enzyme Action k1 k3 E + S ↔ ES ↔ E + P k2 k4 Michaelis- Menten Equation:: υ = (vmax) (S) Km + (S) Vmax is the turnover number When υ = ½ vmax: Km = (S)
  • 55. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 55 Enzyme Kinetics: Lineweaver – Burke Plots • an alternative linear transformation of the M-M equation • estimation of the value of Km is inconvenient from Michaelis Equation plot and several more convenient forms of the equation have been developed. • The reciprocal of the equation, a linear form called the Lineweaver – Burke plot is used. • 1/υ = Km + (S) / vmax (S) = Km / vmax (S) + (S) / vmax (S) = Km / vmax x 1 / (S) + 1 / vmax (eqn for st. line)
  • 56. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 56 Enzyme Kinetics:
  • 57. Section 21.9 Regulation of Enzyme Activity Copyright © Cengage Learning. All rights reserved 57 Enzyme Kinetics: Competitive inhibitor: Noncompetitive inhibitor: Uncompetitive inhibitor: - binds free E - binds free E & ES complex - binds ES complex - reversible - reversible; irriversible - irriversible -V max the same - V max decreases - V max decreases - Km increases - Km constant - Km decreases
  • 58. Section 21.10 Prescription Drugs That Inhibit Enzyme Activity Copyright © Cengage Learning. All rights reserved 58 – Different cells in the body produce enzymes for the same type of reactions. – Enzymes that catalyze the same reactions but vary slightly in structure are called isoenzymes. – For example, there are five isoenzymes for lactate dehydrogenase (LDH), an enzyme that converts lactic acid to pyruvic acid. Isoenzyme LDH1 LDH2 LDH3 LDH4 LDH5 Subunits H4 H3M H2M2 HM3 M4 Abundant in Heart Heart Kidneys Spleen Liver, skeletal muscle kidneys kidneys, brain brain, rbc Clinical Applications of Enzymes
  • 59. Section 21.10 Prescription Drugs That Inhibit Enzyme Activity Copyright © Cengage Learning. All rights reserved 59 • Enzymes produced in certain organ/tissues if found in blood serum may indicate certain damage to that organ/tissue Clinical Applications of Enzymes Serum Enzymes used in diagnosis of tissue damage Organ Condition Diagnostic Enzymes Heart Myocardial infarction Lactate dehydrogenase (LDH 1 ) ; Creatine kinase (CK 2 ) ; Glutamic oxaloacetic transaminase (GOT) Liver Cirrhosis, carcinoma, Glutamic pyruvic transaminase (GPT) ; Hepatitis Lactate dehydrogenase (LDH 5 ) ; Alkaline phosphatase (ALP) ; GOT Bone Rickets, carcinoma Alkaline phosphatase (ALP) Pancreas Pancreatic diseases Amylase ; Cholinesterase ; Lipase (LPS) Prostate Carcinoma Acid phosphatase (ACP)
  • 60. Section 21.10 Prescription Drugs That Inhibit Enzyme Activity Copyright © Cengage Learning. All rights reserved 60 Clinical Applications of Enzymes
  • 61. Section 21.2 Enzyme Structure Copyright © Cengage Learning. All rights reserved 61 Coenzymes / Cofactors • the water-soluble vitamins, which include all B-vitamins and Vitamin C, act as coenzymes or coenzyme precursors • cofactors are bound to the enzyme for it to maintain the correct configuration at the active site • provide additional chemically reactive functional group
  • 62. Section 21.2 Enzyme Structure Copyright © Cengage Learning. All rights reserved 62 Coenzymes / Cofactors
  • 63. Section 21.2 Enzyme Structure Copyright © Cengage Learning. All rights reserved 63 Coenzymes / Cofactors Cofactors ============================================================= Metal Ion Enzymes ------------------------------------------------------------------------------------------------------------------------- Ca 2+ Thromboplastin Cu2+ Tyrosinase, cytochrome oxidase Fe2+ ; Fe3+ Cytochrome oxidase, catalase, dehydrogenase Mg2+ Pyruvate kinase Mn2+ Arginase, pyruvate carboxylase, phosphatase, succinic dehydrogenase, glycosyl transferases, cholinesterase K+ Pyruvate kinase Zn2+ Carbonic anhydrase, carboxypeptidase, lactic dehydrogenase, alcohol dehydrogenase ========================================================================
  • 64. Section 21.12 General Characteristics of Vitamins Copyright © Cengage Learning. All rights reserved 64 • Vitamin: An organic compound essential for proper functioning of the body • Must be obtained from dietary sources because human body can’t synthesize them in enough amounts • Needed in micro and milligram quantities – 1 gram of vitamin B is sufficient for 500,000 people • Enough vitamin can be obtained from balanced diet • Supplemental vitamins may be needed after illness • Many enzymes contain vitamins as part of their structures - conjugated enzymes • Two classes of vitamins – Water-Soluble and Fat-Soluble • Synthetic and natural vitamins have the same function – 13 Known vitamins
  • 65. Section 21.12 General Characteristics of Vitamins Copyright © Cengage Learning. All rights reserved 65
  • 66. Section 21.12 General Characteristics of Vitamins Copyright © Cengage Learning. All rights reserved 66
  • 67. Section 21.12 General Characteristics of Vitamins Copyright © Cengage Learning. All rights reserved 67 Vitamin C • Humans, monkeys, apes and guinea pigs need dietary vitamins • Co-substrate in the formation of structural protein collagen - collagen also contains hydroxylysine and hydroxylproline. - hydroxylation of lysine and proline in collagen formation are catalyzed by enzymes that require ascorbic acid (Vit. C) and iron. - in Vit. C deficiency, hydroxylation is impaired, and the triple helix of the collagen is not assembled properly. - persons deprived of Vit. C develops scurvy, a disease whose symptoms include skin lesions, fragile blood vessels, loose teeth, and bleeding gums • Involved in metabolism of certain amino acids
  • 68. Section 21.14 Water-Soluble Vitamins: The B Vitamins Copyright © Cengage Learning. All rights reserved 68 • Major function: B Vitamins are components of many coenzymes • Serve as temporary carriers of atoms or functional groups in redox and group transfer reactions associated with metabolism • The preferred and alternative names for the B vitamins – Thiamin (vitamin B1) – Riboflavin (vitamin B2) – Niacin (nicotinic acid, nicotinamide, vitamin B3) – Pantothenic acid (vitamin B5) – Vitamin B6 (pyridoxine, pyridoxal, pyridoxamine) – Folate (folic acid) – Vitamin B12 (cobalamin) – Biotin •
  • 69. Section 21.14 Water-Soluble Vitamins: The B Vitamins Copyright © Cengage Learning. All rights reserved 69
  • 70. Section 21.15 Fat-Soluble Vitamins Vitamins A, D, E, K • Involved in plasma membrane processes • More hydrocarbon like with fewer functional groups • Occur in the lipid fractions of their sources • Their molecules have double bonds or phenol rings, so oxidizing agents readily attack them • Destroyed by prolonged exposures to air or to the organic peroxides that develop in fats and oils turning rancid. • Because the fat-soluble vitamins are easily oxidized, they destroy oxidizing agents (which are involved in the development of coronary heart disease, genetic mutations, and cancer) Copyright © Cengage Learning. All rights reserved 70
  • 71. Section 21.15 Fat-Soluble Vitamins Vitamin A • a primary alcohol of molecular formula C20H30O; occur only in the animal world, where the best sources are cod-liver oil and other fish-liver oils, animal liver and dairy products • provitamin A is found in the plant world in the form of carotenes. Provitamins have no vitamin activity; however, after ingestion in the diet, -carotene is cleaved at the central carbon-carbon double bond to give 2 molecules of Vit. A. Copyright © Cengage Learning. All rights reserved 71
  • 72. Section 21.15 Fat-Soluble Vitamins Functions of Vitamin A • Vision: in the eye- vitamin A combines with opsin protein to form the visual pigment rhodopsin which further converts light energy into nerve impulses that are sent to the brain. • Regulating Cell Differentiation: a process in which immature cells change to specialized cells with function. – example: differentiation of bone marrow cells white blood cells and red blood cells. • Maintenance of the health of epithelial tissues via epithelial tissue differentiation. – lack of vitamin A causes skin surface to become drier and harder than normal. • Reproduction and Growth: in men, vitamin A participates in sperm development. In women, normal fetal development during pregnancy requires vitamin A. Copyright © Cengage Learning. All rights reserved 72
  • 73. Section 21.15 Fat-Soluble Vitamins Vitamin D - Sunshine Vitamin • The antirachitic vitamin • Necessary for the normal calcification of bone tissue • It controls correct ratio of Ca and P for bone mineralization (hardening) • Two forms active in the body: Vitamin D2 and D3 • Pigment in the skin, 7- dehydrocholesterol, is a provitamin D; when irradiated by the sun becomes converted to Vit. D3 • humans exposed to sunlight year- round do not require dietary Vit. D Copyright © Cengage Learning. All rights reserved 73
  • 74. Section 21.15 Fat-Soluble Vitamins Vitamin E - Antisterility vitamin • Alpha-tocopherol is the most active biological active form of Vitamin E • tocopherol  Greek, promoter of childbirth • functions in the body as an antioxidant in that it inhibits the oxidation of unsat’d fatty acids by O2 • Primary function: Antioxidant – protects against oxidation of other compounds Copyright © Cengage Learning. All rights reserved 74
  • 75. Section 21.15 Fat-Soluble Vitamins Vitamin K - Antihemorrhagic vitamin • Vit K is synthesized by bacteria that grow in colon • Active in the formation of proteins involved in regulating blood clotting • Deficiency may occur during the first few days after birth, because newborns lack the intestinal bacteria that produce Vit. K and because they have no store of Vit. K (it does not cross the placenta) • Deficiency may also occur following antibiotic therapy that sterilizes the gut Copyright © Cengage Learning. All rights reserved 75