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Introduction to General
    Biology: Botany

   Dr. Malona V. Alinsug
Humans & Plants




Sequioa sempervirens             Opium poppy capsules




                                  Penicillium colony
Virtually, all living organisms are dependent on green
                                                    organisms.
                                                                           - after 11 yrs, all organisms will be
                                                                           suffocated
                                                                                            8000
                                                                                                    Results:
                                                                                                    - Greenhouse Effects
    Population




                                                                                           6000
                                                                                                    - ozone depletion
    Human




                                                                                           4000
                                                                                                    - climate changes
                                                                                        2000        - contamination of
                        6000 BC
                                  7,750 yrs
                                                                                                       ground water by NO4
                                              1850                                     0
                                                     1920
                                                            1980
Known Plant Resources




                                                                    2009
                                                                            2025

                                                                                        20,000     Mitigating measures:
                                                                                                   - Human population control
                                                                                       15,000      - Waste recycling
                                                                                                   - Biological pest controls
                                                                                       10,000      - Energy conservation
                                                                                                   - alternative fuel sources
                                                                                   5,000                - methanol
                        6000 BC
                                  7,750 yrs
                                              1850
                                                                                                        - ethanol (???)
                                                     1920                          0
                                                            1980
                                                                   2009
                                                                           2025
What about plants and the
                                          future?
                                                                                            8000
                                                                                                   To ensure our survival,
                                                                                                   - fully explore all
    Population




                                                                                           6000
                                                                                                      possible potentials of
    Human




                                                                                           4000       plants (food, shelter,
                                                                                                      drugs, clothing,
                                                                                        2000
                        6000 BC                                                                       clean-up, etc.)
                                  7,750 yrs
                                              1850
                                                     1920                              0           - know plants better:
                                                            1980
                                                                    2009                              BOTANISTS
Known Plant Resources




                                                                            2025

                                                                                        20,000



                                                                                       15,000
                                                                                                     33%
                                                                                       10,000
                                                                                                                   unknow
                                                                                                                   n
                                                                                   5,000                             67%
                        6000 BC
                                  7,750 yrs
                                              1850                                 0
                                                     1920
                                                            1980
                                                                   2009
                                                                           2025
                                                                                             ex. DENR: decomposed wastes as fertilize
Botany as a science
- Greek words: botanikos (botanical),
  botane (plant or herb), and boskein (to
  feed)
- French word botanique (botanical)
- trace its origin from Stone Age people who
  tried to modify their surroundings and feed
  themselves (food, fiber, fuel, medicines,
  etc.)
- intellectuals arose wondering how plants
  reproduce, cure, sustain fire --- SCIENCE
Scientists use two main forms of inquiry
                         in their study of nature
 • The word Science is derived from Latin and
   means “to know”
 • Inquiry is the search for information and
   explanation
 • There are two main types of scientific inquiry:
   discovery science and hypothesis-based science




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Discovery Science

 • Discovery science describes natural structures
   and processes
 • This approach is based on observation and the
   analysis of data




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Types of Data

 • Data are recorded observations or items of
   information
 • Data fall into two categories
        – Qualitative, or descriptions rather than
          measurements
        – Quantitative, or recorded measurements, which are
          sometimes organized into tables and graphs




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-23
Induction in Discovery Science

 • Inductive reasoning draws conclusions through
   the logical process of induction
 • Repeat specific observations can lead to
   important generalizations
        – For example, “the sun always rises in the east”




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Deduction: The “If…Then” Logic of Hypothesis
                  Based Science
 • Deductive reasoning uses general premises to
   make specific predictions
 • For example, if organisms are made of cells
   (premise 1), and humans are organisms
   (premise 2), then humans are composed of cells
   (deductive prediction)




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Hypothesis-Based Science

 • Observations can lead us to ask questions and
   propose hypothetical explanations called
   hypotheses




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
The Role of Hypotheses in Inquiry
 • A hypothesis is a tentative answer to a well-
   framed question
 • A scientific hypothesis leads to predictions that
   can be tested by observation or experimentation
 • For example,
        – Observation: Your flashlight doesn‘t work
        – Question: Why doesn’t your flashlight work?
        – Hypothesis 1: The batteries are dead
        – Hypothesis 2: The bulb is burnt out
 • Both these hypotheses are testable
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-24




                                      Observations




                                        Question




                  Hypothesis #1:                     Hypothesis #2:
                  Dead batteries                     Burnt-out bulb



                Prediction:                          Prediction:
                Replacing batteries                  Replacing bulb
                will fix problem                     will fix problem




                  Test prediction                    Test prediction




            Test falsifies hypothesis      Test does not falsify hypothesis
Fig. 1-24a




                              Observations




                               Question




             Hypothesis #1:                  Hypothesis #2:
             Dead batteries                  Burnt-out bulb
Fig. 1-24b

                Hypothesis #1:                  Hypothesis #2:
                Dead batteries                  Burnt-out bulb



              Prediction:                       Prediction:
              Replacing batteries               Replacing bulb
              will fix problem                  will fix problem




                 Test prediction                 Test prediction




             Test falsifies hypothesis   Test does not falsify hypothesis
A Closer Look at Hypotheses in
                                Scientific Inquiry
 • A hypothesis must be testable and falsifiable
 • Hypothesis-based science often makes use of
   two or more alternative hypotheses
 • Failure to falsify a hypothesis does not prove
   that hypothesis
        – For example, you replace your flashlight bulb, and it
          now works; this supports the hypothesis that your
          bulb was burnt out, but does not prove it (perhaps
          the first bulb was inserted incorrectly)


Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
The Myth of the Scientific Method

 • The scientific method is an idealized process of
   inquiry
 • Hypothesis-based science is based on the
   “textbook” scientific method but rarely follows
   all the ordered steps
 • Discovery science has made important
   contributions with very little dependence on the
   so-called scientific method


Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
A Case Study in Scientific Inquiry:
     Investigating Mimicry in Snake Populations
 • Many poisonous species are brightly colored,
   which warns potential predators
 • Mimics are harmless species that closely
   resemble poisonous species
 • Henry Bates hypothesized that this mimicry
   evolved in harmless species as an evolutionary
   adaptation that reduces their chances of being
   eaten

Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
• This hypothesis was tested with the poisonous
   eastern coral snake and its mimic the
   nonpoisonous scarlet kingsnake
 • Both species live in the Carolinas, but the
   kingsnake is also found in regions without
   poisonous coral snakes
 • If predators inherit an avoidance of the coral
   snake’s coloration, then the colorful kingsnake
   will be attacked less often in the regions where
   coral snakes are present
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-25

 Scarlet kingsnake (nonpoisonous)
                                       Key
                                    Range of scarlet
                                    kingsnake only
                                    Overlapping ranges of
                                    scarlet kingsnake and
                                    eastern coral snake

                        North
                       Carolina
                                                             Eastern coral snake
                                                             (poisonous)
             South
            Carolina




                                      Scarlet kingsnake (nonpoisonous)
Field Experiments with Artificial Snakes

 • To test this mimicry hypothesis, researchers
   made hundreds of artificial snakes:
        – An experimental group resembling kingsnakes
        – A control group resembling plain brown snakes
 • Equal numbers of both types were placed at
   field sites, including areas without poisonous
   coral snakes




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-26




            (a) Artificial kingsnake




            (b) Brown artificial snake that has been attacked
Fig. 1-26a




             (a) Artificial kingsnake
Fig. 1-26b




             (b) Brown artificial snake that has been attacked
• After four weeks, the scientists retrieved the
   artificial snakes and counted bite or claw marks
 • The data fit the predictions of the mimicry
   hypothesis: the ringed snakes were attacked less
   frequently in the geographic region where coral
   snakes were found




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-27


                   RESULTS

                                       100                                 Artificial
                                                                           kingsnakes
                                              83%                  84%
                                                                           Brown
            Percent of total attacks



                                       80
                                                                           artificial
              on artificial snakes




                                                                           snakes
                                       60


                                       40


                                       20           17%      16%


                                       0
                                             Coral snakes   Coral snakes
                                               absent         present
Designing Controlled Experiments

 • A controlled experiment compares an experimental group
   (the artificial kingsnakes) with a control group (the artificial
   brown snakes)
 • Ideally, only the variable of interest (the color pattern of
   the artificial snakes) differs between the control and
   experimental groups
 • A controlled experiment means that control groups are
   used to cancel the effects of unwanted variables
 • A controlled experiment does not mean that all unwanted
   variables are kept constant



Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Limitations of Science

 • In science, observations and experimental
   results must be repeatable
 • Science cannot support or falsify supernatural
   explanations, which are outside the bounds of
   science




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Theories in Science

 • In the context of science, a theory is:
        – Broader in scope than a hypothesis
        – General, and can lead to new testable hypotheses
        – Supported by a large body of evidence in
          comparison to a hypothesis




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Model Building in Science

 • Models are representations of natural
   phenomena and can take the form of:
        – Diagrams
        – Three-dimensional objects
        – Computer programs
        – Mathematical equations




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-28
             From        From
             body        lungs



             Right        Left
            atrium       atrium




              Right       Left
            ventricle   ventricle




            To lungs    To body
The Culture of Science

 • Most scientists work in teams, which often
   include graduate and undergraduate students
 • Good communication is important in order to
   share results through seminars, publications,
   and websites




Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-29
Science, Technology, and Society

 • The goal of science is to understand natural
   phenomena
 • The goal of technology is to apply scientific
   knowledge for some specific purpose
 • Science and technology are interdependent
 • Biology is marked by “discoveries,” while
   technology is marked by “inventions”



Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
• The combination of science and technology has
   dramatic effects on society
        – For example, the discovery of DNA by James Watson
          and Francis Crick allowed for advances in DNA
          technology such as testing for hereditary diseases
 • Ethical issues can arise from new technology,
   but have as much to do with politics,
   economics, and cultural values as with science
   and technology


Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 1-30
Diversification of Plant Study
Plant Anatomy       17th            Plant Ecology
- internal structure of             - plant interactions w/
   plants                              env’t
 Plant Physiology                   Plant Morphology
- plant function                    - form & structure of
- JB van Helmont: plant differ in      plants
nutritional needs                   Plant Genetics
Plant Taxonomy                      - how traits are
- describing, naming,                  transferred
  classifying plants                - polymorphism
- Linnaeus binomial                 - chloroplast DNA
  system                            Plant Cytology
Plant Geography                     - cell structure & function
- how & why plants are              Ethnobotany
  distributed                       - practical uses of plants
The End!
Science vs Non-science
Scientific Procedure:
1. Question ???
2. Hypothesis
3. Experimentation
- must be repeatable and capable of being
  duplicated by others
- control vs variable
4. Formulation of generalization (principle)
5. Concurrence of related principles =
   THEORY

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Introduction to Botany Science

  • 1. Introduction to General Biology: Botany Dr. Malona V. Alinsug
  • 2. Humans & Plants Sequioa sempervirens Opium poppy capsules Penicillium colony
  • 3. Virtually, all living organisms are dependent on green organisms. - after 11 yrs, all organisms will be suffocated 8000 Results: - Greenhouse Effects Population 6000 - ozone depletion Human 4000 - climate changes 2000 - contamination of 6000 BC 7,750 yrs ground water by NO4 1850 0 1920 1980 Known Plant Resources 2009 2025 20,000 Mitigating measures: - Human population control 15,000 - Waste recycling - Biological pest controls 10,000 - Energy conservation - alternative fuel sources 5,000 - methanol 6000 BC 7,750 yrs 1850 - ethanol (???) 1920 0 1980 2009 2025
  • 4. What about plants and the future? 8000 To ensure our survival, - fully explore all Population 6000 possible potentials of Human 4000 plants (food, shelter, drugs, clothing, 2000 6000 BC clean-up, etc.) 7,750 yrs 1850 1920 0 - know plants better: 1980 2009 BOTANISTS Known Plant Resources 2025 20,000 15,000 33% 10,000 unknow n 5,000 67% 6000 BC 7,750 yrs 1850 0 1920 1980 2009 2025 ex. DENR: decomposed wastes as fertilize
  • 5. Botany as a science - Greek words: botanikos (botanical), botane (plant or herb), and boskein (to feed) - French word botanique (botanical) - trace its origin from Stone Age people who tried to modify their surroundings and feed themselves (food, fiber, fuel, medicines, etc.) - intellectuals arose wondering how plants reproduce, cure, sustain fire --- SCIENCE
  • 6. Scientists use two main forms of inquiry in their study of nature • The word Science is derived from Latin and means “to know” • Inquiry is the search for information and explanation • There are two main types of scientific inquiry: discovery science and hypothesis-based science Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 7. Discovery Science • Discovery science describes natural structures and processes • This approach is based on observation and the analysis of data Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 8. Types of Data • Data are recorded observations or items of information • Data fall into two categories – Qualitative, or descriptions rather than measurements – Quantitative, or recorded measurements, which are sometimes organized into tables and graphs Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 10. Induction in Discovery Science • Inductive reasoning draws conclusions through the logical process of induction • Repeat specific observations can lead to important generalizations – For example, “the sun always rises in the east” Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 11. Deduction: The “If…Then” Logic of Hypothesis Based Science • Deductive reasoning uses general premises to make specific predictions • For example, if organisms are made of cells (premise 1), and humans are organisms (premise 2), then humans are composed of cells (deductive prediction) Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 12. Hypothesis-Based Science • Observations can lead us to ask questions and propose hypothetical explanations called hypotheses Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 13. The Role of Hypotheses in Inquiry • A hypothesis is a tentative answer to a well- framed question • A scientific hypothesis leads to predictions that can be tested by observation or experimentation • For example, – Observation: Your flashlight doesn‘t work – Question: Why doesn’t your flashlight work? – Hypothesis 1: The batteries are dead – Hypothesis 2: The bulb is burnt out • Both these hypotheses are testable Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 14. Fig. 1-24 Observations Question Hypothesis #1: Hypothesis #2: Dead batteries Burnt-out bulb Prediction: Prediction: Replacing batteries Replacing bulb will fix problem will fix problem Test prediction Test prediction Test falsifies hypothesis Test does not falsify hypothesis
  • 15. Fig. 1-24a Observations Question Hypothesis #1: Hypothesis #2: Dead batteries Burnt-out bulb
  • 16. Fig. 1-24b Hypothesis #1: Hypothesis #2: Dead batteries Burnt-out bulb Prediction: Prediction: Replacing batteries Replacing bulb will fix problem will fix problem Test prediction Test prediction Test falsifies hypothesis Test does not falsify hypothesis
  • 17. A Closer Look at Hypotheses in Scientific Inquiry • A hypothesis must be testable and falsifiable • Hypothesis-based science often makes use of two or more alternative hypotheses • Failure to falsify a hypothesis does not prove that hypothesis – For example, you replace your flashlight bulb, and it now works; this supports the hypothesis that your bulb was burnt out, but does not prove it (perhaps the first bulb was inserted incorrectly) Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 18. The Myth of the Scientific Method • The scientific method is an idealized process of inquiry • Hypothesis-based science is based on the “textbook” scientific method but rarely follows all the ordered steps • Discovery science has made important contributions with very little dependence on the so-called scientific method Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 19. A Case Study in Scientific Inquiry: Investigating Mimicry in Snake Populations • Many poisonous species are brightly colored, which warns potential predators • Mimics are harmless species that closely resemble poisonous species • Henry Bates hypothesized that this mimicry evolved in harmless species as an evolutionary adaptation that reduces their chances of being eaten Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 20. • This hypothesis was tested with the poisonous eastern coral snake and its mimic the nonpoisonous scarlet kingsnake • Both species live in the Carolinas, but the kingsnake is also found in regions without poisonous coral snakes • If predators inherit an avoidance of the coral snake’s coloration, then the colorful kingsnake will be attacked less often in the regions where coral snakes are present Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 21. Fig. 1-25 Scarlet kingsnake (nonpoisonous) Key Range of scarlet kingsnake only Overlapping ranges of scarlet kingsnake and eastern coral snake North Carolina Eastern coral snake (poisonous) South Carolina Scarlet kingsnake (nonpoisonous)
  • 22. Field Experiments with Artificial Snakes • To test this mimicry hypothesis, researchers made hundreds of artificial snakes: – An experimental group resembling kingsnakes – A control group resembling plain brown snakes • Equal numbers of both types were placed at field sites, including areas without poisonous coral snakes Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 23. Fig. 1-26 (a) Artificial kingsnake (b) Brown artificial snake that has been attacked
  • 24. Fig. 1-26a (a) Artificial kingsnake
  • 25. Fig. 1-26b (b) Brown artificial snake that has been attacked
  • 26. • After four weeks, the scientists retrieved the artificial snakes and counted bite or claw marks • The data fit the predictions of the mimicry hypothesis: the ringed snakes were attacked less frequently in the geographic region where coral snakes were found Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 27. Fig. 1-27 RESULTS 100 Artificial kingsnakes 83% 84% Brown Percent of total attacks 80 artificial on artificial snakes snakes 60 40 20 17% 16% 0 Coral snakes Coral snakes absent present
  • 28. Designing Controlled Experiments • A controlled experiment compares an experimental group (the artificial kingsnakes) with a control group (the artificial brown snakes) • Ideally, only the variable of interest (the color pattern of the artificial snakes) differs between the control and experimental groups • A controlled experiment means that control groups are used to cancel the effects of unwanted variables • A controlled experiment does not mean that all unwanted variables are kept constant Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 29. Limitations of Science • In science, observations and experimental results must be repeatable • Science cannot support or falsify supernatural explanations, which are outside the bounds of science Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 30. Theories in Science • In the context of science, a theory is: – Broader in scope than a hypothesis – General, and can lead to new testable hypotheses – Supported by a large body of evidence in comparison to a hypothesis Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 31. Model Building in Science • Models are representations of natural phenomena and can take the form of: – Diagrams – Three-dimensional objects – Computer programs – Mathematical equations Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 32. Fig. 1-28 From From body lungs Right Left atrium atrium Right Left ventricle ventricle To lungs To body
  • 33. The Culture of Science • Most scientists work in teams, which often include graduate and undergraduate students • Good communication is important in order to share results through seminars, publications, and websites Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 35. Science, Technology, and Society • The goal of science is to understand natural phenomena • The goal of technology is to apply scientific knowledge for some specific purpose • Science and technology are interdependent • Biology is marked by “discoveries,” while technology is marked by “inventions” Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 36. • The combination of science and technology has dramatic effects on society – For example, the discovery of DNA by James Watson and Francis Crick allowed for advances in DNA technology such as testing for hereditary diseases • Ethical issues can arise from new technology, but have as much to do with politics, economics, and cultural values as with science and technology Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
  • 38. Diversification of Plant Study Plant Anatomy 17th Plant Ecology - internal structure of - plant interactions w/ plants env’t Plant Physiology Plant Morphology - plant function - form & structure of - JB van Helmont: plant differ in plants nutritional needs Plant Genetics Plant Taxonomy - how traits are - describing, naming, transferred classifying plants - polymorphism - Linnaeus binomial - chloroplast DNA system Plant Cytology Plant Geography - cell structure & function - how & why plants are Ethnobotany distributed - practical uses of plants
  • 40. Science vs Non-science Scientific Procedure: 1. Question ??? 2. Hypothesis 3. Experimentation - must be repeatable and capable of being duplicated by others - control vs variable 4. Formulation of generalization (principle) 5. Concurrence of related principles = THEORY