Autodoc

1. Takayuki Shimizukawa
Sphinx co-maintainer
Sphinx-users.jp
1

2. Who am I
@shimizukawa
1. Sphinx co-maintainer
2. Sphinx-users.jp
3. PyCon JP committee
 BePROUD co, ltd.
2

3. http://pycon.jp/
3

4. Early Bird Registration: ２１０ tickets.
Speaker Call for Proposals: until July 15th.
4
180 tickets gone

5. 5

6. Do you know
the docstring?
6

7. 1. def dumps(obj, ensure_ascii=True):
2. """Serialize ``obj`` to a JSON formatted
``str``.
3. """
4.
5. ...
6. return ...
Line 2,3 is a docstring
You can see the string by "help(dumps)"
Docstring
7

8. Have you written
API docs
using docstrings?
8

9. What is the reason you do not write docstrings.
 I don't know what/where should I write.
 Are there some docstring format spec?
 It's not beneficial.
I'll tell you a good way to write the docstrings.
9

10. Goal of this session
 How to generate a doc from Python source
code.
 re-discovering the meaning of docstrings.
10

11. 11

12. What is Sphinx?
 Sphinx is a Open Source documentation generator.
 Sphinx was created to generate Python official
library's document.
 Sphinx generates doc as several output formats
from the reST text markup.
Sphinx
reSTreSTreStructuredText
(reST) reST Parser
HTML Builder
ePub Builder
LaTeX Builder texlive
HTML
theme
Favorite Editor
12

13. Many docs are written by Sphinx
For examples
 Python libraries/tools:
Python, Sphinx, Flask, Jinja2, Django, Pyramid,
SQLAlchemy, Numpy, SciPy, scikit-learn,
pandas, fabric, ansible, awscli, …
 Non python libraries/tools:
Chef, CakePHP(2.x), MathJax, Selenium,
Varnish
13

14. Relation between Sphinx and Docutils
 Sphinx based upon Docutils library
 Docutils/Sphinx supports reStructuredText
it called reST, it's an extensible markup
(PEP287 / accepted at 2002)
Sphinx
reST
Parser
HTML Builder
ePub Builder
LaTeX Builder
HTML
theme
docutils
14

15. Comparing Docutils and Sphinx
Docutils Sphinx
1. Single page
2. Link to others with full name
3. Cross reference in a page
4. Writers: html, latex, man,
xml, ...
5. Standard reST markup specs
1. Multiple Pages
2. toctree to connect all pages
under single tree structure
3. Cross reference over each other
pages
4. Additional writers: html(w/
themes), pdf(latex), texinfo,
epub, …
5. Additional markup specs:
autodoc directive and so on
15
1. Sphinx introduction & Setup for i18n

16. Sphinx extensions (built-in)
Sphinx extensions extend reST markup and
provide extra writers.
Sphinx provides these extensions to support
automated API documentation.
 sphinx.ext.autodoc
 sphinx.ext.autosummary
 sphinx.ext.doctest
 sphinx.ext.coverage
Sphinx
reST Parser
HTML Builder
ePub Builder
LaTeX Builder
docutils
autosummary
autodoc
doctest
coverage
16

17. library code example
1. "utility functions"
2.
3. def dumps(obj, ensure_ascii=True):
4. """Serialize ``obj`` to a JSON formatted ``str``.
5. """
6. ...
deep_thought/utils.py
$ tree /path/to/your-code
+- deep_thought
| +- __init__.py
| +- api.py
| +- calc.py
| +- utils.py
+- setup.py
17

18. $ pip install sphinx
 Your code and sphinx should be in single
python environment.
 Python version is also important.
How to install Sphinx
18

19. $ cd /path/to/your-code
$ sphinx-quickstart doc -m
...
Project name: Deep thought
Author name(s): Mice
Project version: 0.7.5
...
...
Finished
 "-m" to generate minimal Makefile/make.bat
 -m is important to introduce this session easily.
How to start a Sphinx project
Keep pressing ENTER key
19
Create a doc directory

20. $ cd doc
$ make html
...
Build finished. The HTML pages are in _build/html.
"make html" command
generates html files into
_build/html.
make html once
20

21. Current files structure
$ tree /path/to/your-code
+- deep_thought
| +- __init__.py
| +- api.py
| +- calc.py
| +- utils.py
+- doc
| +- _build/
| | +- html/
| +- _static/
| +- _template/
| +- conf.py
| +- index.rst
| +- make.bat
| +- Makefile
+- setup.py
Scaffold files
Build output
Library files
21

22. 22

23. $ tree /path/to/your-code
+- deep_thought
| +- __init__.py
| +- api.py
| +- calc.py
| +- utils.py
+- doc
| +- _build/
| | +- html/
| +- _static/
| +- _template/
| +- conf.py
| +- index.rst
| +- make.bat
| +- Makefile
+- setup.py
1. import os
2. import sys
3. sys.path.insert(0, os.path.abspath('..'))
4. extensions = [
5. 'sphinx.ext.autodoc',
6. ]
setup autodoc extension
doc/conf.py
23
Line-3: add your library path to
import them from Sphinx autodoc.
Line-5: add 'sphinx.ext.autodoc' to
use the extension.

24. Add automodule directive to your doc
1. Deep thought API
2. ================
3.
4. .. automodule:: deep_thought.utils
5. :members:
6.
1. "utility functions"
2.
3. def dumps(obj, ensure_ascii=True):
4. """Serialize ``obj`` to a JSON formatted ``str``.
5. """
6. ...
doc/index.rst
24
deep_thought/utils.py
Line-4: automodule directive import specified
module and inspect the module.
Line-5: :members: option will inspects all members
of module not only module docstring.

25. $ cd doc
$ make html
...
Build finished. The HTML pages are in _build/html.
make html
25

26. How does it work?
autodoc directive generates intermediate reST
internally:
1. Deep thought API
2. ================
3.
4. .. py:module:: deep_thought.utils
5.
6. utility functions
7.
8. .. py:function:: dumps(obj, ensure_ascii=True)
9. :module: deep_thought.utils
10.
11. Serialize ``obj`` to a JSON formatted :class:`str`.
doc/index.rst
Intermediate
reST
26

27. $ make html SPHINXOPTS=-vvv
...
...
[autodoc] output:
.. py:module:: deep_thought.utils
utility functions
.. py:function:: dumps(obj, ensure_ascii=True)
:module: deep_thought.utils
Serialize ``obj`` to a JSON formatted :class:`str`.
You can see the reST with -vvv option
27

28. Take care!
Sphinx autodoc import your code
to get docstrings.
It means autodoc will execute code
at module global level.
28

29. Danger code
1. import os
2.
3. def delete_world():
4. os.system('sudo rm -Rf /')
5.
6. delete_world() # will be executed at "make html"
danger.py
29

30. execution guard on import
1. import os
2.
3. def delete_world():
4. os.system('sudo rm -Rf /')
5.
6. delete_world() # will be executed at "make html"
danger.py
1. import os
2.
3. def delete_world():
4. os.system('sudo rm -Rf /')
5.
6. if __name__ == '__main__':
7. delete_world() # doesn't execute at "make html"
safer.py
Execution guard
30

31. execution guard on import
1. import os
2.
3. def delete_world():
4. os.system('sudo rm -Rf /')
5.
6. delete_world() # will be executed at "make html"
danger.py
1. import os
2.
3. def delete_world():
4. os.system('sudo rm -Rf /')
5.
6. if __name__ == '__main__':
7. delete_world() # doesn't execute at "make html"
safer.py
Execution guard
31

32. "Oh, I can't understand the type of arguments
and meanings even reading this!"
32
Lacking necessary information

33. 1. def dumps(obj, ensure_ascii=True):
2. """Serialize ``obj`` to a JSON formatted
3. :class:`str`.
4.
5. :param dict obj: dict type object to serialize.
6. :param bool ensure_ascii: Default is True. If
7. False, all non-ASCII characters are not ...
8. :return: JSON formatted string
9. :rtype: str
10. """
 http://sphinx-doc.org/domains.html#info-field-lists
"info field lists" for arguments
deep_thought/utils.py
33

34. def dumps(obj, ensure_ascii=True):
"""Serialize ``obj`` to a JSON formatted :class:`str`.
:param dict obj: dict type object to serialize.
:param bool ensure_ascii: Default is True. If
False, all non-ASCII characters are not ...
:return: JSON formatted string
:rtype: str
"""
...
"info field lists" for arguments
deep_thought/utils.py
34

35. Cross-reference to functions
1. Examples
2. ==========
3.
4. This is a usage of :func:`deep_thought.utils.dumps`
blah blah blah. ...
examples.py
reference
(hyper link)
35

36. 36

37. Code example in a docstring
1. def dumps(obj, ensure_ascii=True):
2. """Serialize ``obj`` to a JSON formatted
3. :class:`str`.
4.
5. For example:
6.
7. >>> from deep_thought.utils import dumps
8. >>> data = dict(spam=1, ham='egg')
9. >>> dumps(data)
10. '{spam: 1, ham: "egg"}'
11.
12. :param dict obj: dict type object to serialize.
13. :param bool ensure_ascii: Default is True. If
14. False, all non-ASCII characters are not ...
deep_thought/utils.py
37
doctest
block
You can copy & paste the red lines
from python interactive shell.

38. Syntax highlighted output
$ make html
...
rendered
doctest
block
38

39.  You can expect that developers will update code
examples when the interface is changed.
We expect ...
1. def dumps(obj, ensure_ascii=True):
2. """Serialize ``obj`` to a JSON formatted
3. :class:`str`.
4.
5. For example:
6.
7. >>> from deep_thought.utils import dumps
8. >>> data = dict(spam=1, ham='egg')
9. >>> dumps(data)
10. '{spam: 1, ham: "egg"}'
The code example is
very close from
implementation!!
deep_thought/utils.py
39

40. ￣＼_(ツ)_/￣
40

41. doctest builder
41

42. 1. ...
2.
3. extensions = [
4. 'sphinx.ext.autodoc',
5. 'sphinx.ext.doctest',
6. ]
7.
 Line-5: add 'sphinx.ext.doctest' extension.
setup doctest extension
doc/conf.py
append
42

43. $ make doctest
...
Document: api
-------------
********************************************************
File "api.rst", line 11, in default
Failed example:
dumps(data)
Expected:
'{spam: 1, ham: "egg"}'
Got:
'to-be-implemented'
...
make: *** [doctest] Error 1
Result of "make doctest"
43
Result of doctest

44. 44

45. Individual pages for each modules
api.html
calc.html
utils.html
45
1. deep_thought.utils
2. ===================
3. .. automodule:: deep_thought.utils
4. :members:
doc/deep_thought.utils.rst

46. 1. deep_thought.utils
2. ===================
3. .. automodule:: deep_thought.utils
4. :members:
Add automodule directive to your doc
doc/deep_thought.utils.rst
1. deep_thought.calc
2. ==================
3. .. automodule:: deep_thought.calc
4. :members:
1. deep_thought.api
2. ==================
3. .. automodule:: deep_thought.api
4. :members:
doc/deep_thought.calc.rst
doc/deep_thought.api.rst
And many many reST files ... 46

47. ￣＼_(ツ)_/￣
47

48. autosummary extension
48

49. 1. ...
2.
3. extensions = [
4. 'sphinx.ext.autodoc',
5. 'sphinx.ext.doctest',
6. 'sphinx.ext.autosummary',
7. ]
8. autodoc_default_flags = ['members']
9. autosummary_generate = True
10.
 Line-9: autosummary_generate = True
generates reST files what you will specify with
using autosummary directive.
setup autosummary extension
doc/conf.py
append
append
append
49

50. 1. Deep thought API
2. ================
3.
4. .. autosummary::
5. :toctree: generated
6.
7. deep_thought.api
8. deep_thought.calc
9. deep_thought.utils
10.
Replace automodule with autosummary
doc/index.rst
$ make html
...
50

51. Output of autosummary
autosummary directive
become TOC for each
module pages.
51

52. 52

53. 1. def spam():
2. ...
3. return res
4.
5. def ham():
6. ...
7. return res
8.
9. def egg():
10. ...
11. return res
How to find undocumented funcs?
doc/nodoc.py
53

54. coverage extension
54

55. 1. ...
2.
3. extensions = [
4. 'sphinx.ext.autodoc',
5. 'sphinx.ext.doctest',
6. 'sphinx.ext.autosummary',
7. 'sphinx.ext.coverage',
8. ]
9. autodoc_default_flags = ['members']
10. autosummary_generate = True
setup coverage extension
doc/conf.py
append
 Line-7: add 'sphinx.ext.coverage' extension.
55

56. make coverage and check the result
$ make coverage
...
Testing of coverage in the sources finished, look at the
results in _buildcoverage.
$ ls _build/coverage
c.txt python.txt undoc.pickle
1. Undocumented Python objects
2. ===========================
3. deep_thought.utils
4. ------------------
5. Functions:
6. * egg
_build/coverage/python.txt
This function doesn't have a doc!
56

57. CAUTION!
1. Undocumented Python objects
2. ===========================
3. deep_thought.utils
4. ------------------
5. Functions:
6. * egg
python.txt
$ make coverage
...
Testing of coverage in the sources finished, look at the
results in _buildcoverage.
$ ls _build/coverage
c.txt python.txt undoc.pickle
The command always return ZERO
coverage.xml is not exist
reST format for whom?
57

58. Let's make Pull-Request!
We are waiting for your contribution
to solve the problem.
(bow)
58

59. 59

60. Why don't you write docstrings?
 I don't know what/where should I write.
 Let's write a description, arguments and doctest blocks
at the next line of function signature.
 Are there some docstring format spec?
 Yes, you can use "info field list" for argument spec and
you can use doctest block for code example.
 It's not beneficial.
 You can use autodoc, autosummary, doctest and
coverage to make it beneficial.
60

61. 61

62. 1. Options
62

63. Options for autodoc
 :members: blah
 To document just specified members. Empty is ALL.
 :undoc-members: ...
 To document members which doesn't have docstring.
 :private-members: ...
 To document private members which name starts with
underscore.
 :special-members: ...
 To document starts with underscore underscore.
 :inherited-members: ...
 To document inherited from super class.
63

64. 2. Directives for Web API
64

65. sphinxcontrib-httpdomain 3rd-party ext
http domain's get directive
render
page
render routing table (index)
http highlighter
It also contains sphinxcontrib.autohttp.flask, .bottle, .tornado extensions
Listing
New Index
65

66. 3. Document translation
66

67. Translation into other languages
$ make gettext
...
Build finished. The message catalogs are in
_build/gettext.
$ sphinx-intl update -p _build/gettext -l zh_tw
#: ../../../deep_thought/utils.pydocstring of
deep_thought.utils.dumps:1
msgid "Serialize ``obj`` to a JSON formatted :class:`str`."
msgstr "序列化 ``obj`` 要JSON格式 :class:`str`."
msgid "For example:"
msgstr "例如:"
locale/zh_tw/LC_MESSAGES/generated.po
language = 'zh_tw'
locale_dirs = ['locale']
conf.py
$ make html
...
Build finished. The HTML pages are in _build/html.
67

68. Questions?
@shimizukawa
68

69. Thanks :)
69