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Denaturation of Proteins
Koushik Das
M.Sc. 1st
sem
School of Industrial Fisheries
Cochin University of Science&
Technology
Denaturation of Proteins
Can be defined as any change that alters
the unique 3D conformation of a protein
molecule without causing concomitant
cleavage of the peptide bonds
It leads to temporary or permanent loss of
activity.
Denaturation is a process that disrupts
secondary, tertiary, and quaternary
structures.
The primary structure is not destroyed
during denaturation.
∗ Denaturation
∗ Any physical or chemical agent that destroys the
conformation of a protein is said to “denature” it.
∗ Examples:
∗ Heat (boil an egg) Frying an egg is an example of
denaturation by heat. Heat disrupts intermolecular
forces such as hydrogen bonding, and other polar
interactions.
∗ Addition of 6M Urea (breaks H bonds)
∗ Detergents (surface-active agents)
∗ Reducing agents (break -S-S- bonds)
∗ Acids/Bases/Salts (affect salt bridges)
∗ Heavy metal ions (Hg2+
, Pb2+
)
Other denaturing agents:
• Changes in pH, which alters the ability of the acidic and
basic side chains to form salt bridges
• Organic compounds, which will disrupt the disulfide
bonds
• Heavy metals that disrupt salt bridges and disulfide bonds
• Mechanical agitation, which disrupts hydrogen bonds
Denaturation of Proteins
A protein will lose its biological activity if it loses its
three-dimensional shape.
Denaturation of Proteins
© 2011 Pearson Education, Inc.Chapter 9 7
Denaturation of Proteins
∗ At Very High or Low pH.
∗ At Very High Temperatures.
∗ By Heavy Metal Ions.
∗ By Small Polar Molecules.
When and How are Proteins Denatured?
∗ Affects Ionic Bonds.
∗ A High (>9) or Low pH (<3) will neutralise the charge on one
of the ionically bonded ions.
∗ Hence the ionic bond is broken.
Denaturation at HIGH or LOW pH
∗ As the temperature increases the energy of the
protein increases.
∗ As the energy increases bonds are broken in the
following order:
Denaturation at High Temperatures
• Van der Waal’sVan der Waal’s
• Hydrogen BondsHydrogen Bonds
• Ionic BondsIonic Bonds
∗ Certain metal ions will disrupt the Van der Waals’
forces in proteins.
∗ Heavy Metal Ions, such as Ag+
and Hg2+
, also inhibit
enzyme activity.
∗ They do so by reducing the SH groups in cysteine.
Denaturation by Metal Ions
PLEASE NOTE: Spelling mistake on
pictures: --- The S-S bond is a
DISULPHIDE bond.
∗ Urea ( CO(NH2)2 ) in concentrated solution will denature
proteins.
∗ It disrupts the Hydrogen Bonds.
∗ This causes complete denaturation.
Denaturation by Small Polar Molecules
Denaturation at the Quaternary Level
- Dissociation of the subunits
- Dissociation is usually accomplish by disrupting ionic
interaction between certain groups
- Urea, guanidine hydrochloride or dodecyl sulfate
(detergent)
Denaturation at the Tertiary Level
- Heat and ultraviolet radiation
- Extremes of pH (acidic and basic reagents)
- Ions of heavy metals (e.g. Hg2+
, Ag+
, Pb2+
) forms
mercaptides with thiol groups
- Organic solvents or non-polar additives (e.g. ethyl
alcohol, formaldehyde and rubbing alcohol)
Denaturation at the Tertiary Level
- Urea and guanidinium chloride
- Amphipaths can destabilize polar and non-
polar interactions
- Polyethylene glycol – can destabilize
hydrogen bonds
- Performic acid – can cause oxidation of
disulfide bonds
- Mercaptoethanol –can cause disruption of
disulfide bonds
Denaturation of the Secondary Level
High temperature - will increase the vibration
of atoms along hydrogen bonds
Denaturation at the Primary Level
- Hydrolysis
- Enzymes (peptidases)
- Cyanogen bromide, N-
bromosuccinimide
Why is Denaturation Sudden?
Concentration of denaturant or temperature
100%
0%
NativeStructure
Critical value
COOPERATIVE PROCESS
Partly denatured structure is weaker so
begins to change faster
∗ Some denaturation is reversible
∗ Urea (6M) then add to H2O
∗ Some is irreversible
∗ Hard boiling an egg
Denaturation
∗ Denaturation
Denaturation
Unfolding and
Renaturation (refolding)
Anfinsen’s Experiment:
Spontaneous folding of
denatured ribonuclease
The first proof for
“sequence determines structure”
∗ Curling straight hair or straightening curly hair
requires protein denaturation.
∗ Both processes require disruption of disulfide
bonds found in the hair protein keratin.
∗ The disruption of disulfide bonds reshapes the hair
and forces the reformation of disulfide bonds in
new places.
.
Cont..
Ammonium
thioglycolate, which
reduces (breaks)
disulfide bonds, and
hydrogen peroxide
(reforms disulfide
bonds) are two
chemical agents used
in hairstyling.
23
Denaturation of Proteins
∗ The process of denaturation is used as an antidote
for lead or mercury poisoning.
∗ Egg whites can be given to an individual who has
ingested a heavy metal. Egg whites are denaturated
by the heavy metals and a precipitate is formed.
∗ Vomiting is induced to eliminate the metal-protein
precipitate.
Denaturation of Proteins
Behavior of Denatured Protein
Hydrophobic core
Hydrophilic surface
NATIVE
AGGREGATED
or other ingredient interactions
DENATURED
Unfolding forces som
hydrophobic AA to
surface
Fast under non-physiological conditions
Slow under physiological conditions
∗ Loss of enzymatic activity (death)/ Loss of biological
activity
∗ Destruction of toxins
∗ Improved digestibility
∗ Loss of solubility
∗ Changes in texture
∗ Altered water binding capacity
∗ Increased intrinsic viscosity
∗ Inability to crystallize
Consequences of Denaturation
∗ reduce the protein to a simple polypeptide chain
∗ slow freezing and variability of storage conditions, cause this
denaturation.
∗ A denatured protein has not only lost its ability to function as an
enzyme, but also its "water-holding“ ability.
∗ This results in denatured fish flesh dripping excessively when thawed (a
situation known as "drip-thaw"), and appearing white, dull and spongy,
and upon chewing becoming
fibrous and tasteless.
Protein Denaturation
- chemical change during fish autolysis
∗ The conversion of a biologically functional molecule
into a non-functional form
∗ There are many denatured states but one native state
∗ Proteins can regenerate to their native state but
slowly
∗ Denatured proteins have a greater tendency to
aggregate.
Denaturation

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Denaturation of proteins

  • 1. Denaturation of Proteins Koushik Das M.Sc. 1st sem School of Industrial Fisheries Cochin University of Science& Technology
  • 2. Denaturation of Proteins Can be defined as any change that alters the unique 3D conformation of a protein molecule without causing concomitant cleavage of the peptide bonds It leads to temporary or permanent loss of activity.
  • 3. Denaturation is a process that disrupts secondary, tertiary, and quaternary structures. The primary structure is not destroyed during denaturation.
  • 4. ∗ Denaturation ∗ Any physical or chemical agent that destroys the conformation of a protein is said to “denature” it. ∗ Examples: ∗ Heat (boil an egg) Frying an egg is an example of denaturation by heat. Heat disrupts intermolecular forces such as hydrogen bonding, and other polar interactions. ∗ Addition of 6M Urea (breaks H bonds) ∗ Detergents (surface-active agents) ∗ Reducing agents (break -S-S- bonds) ∗ Acids/Bases/Salts (affect salt bridges) ∗ Heavy metal ions (Hg2+ , Pb2+ )
  • 5. Other denaturing agents: • Changes in pH, which alters the ability of the acidic and basic side chains to form salt bridges • Organic compounds, which will disrupt the disulfide bonds • Heavy metals that disrupt salt bridges and disulfide bonds • Mechanical agitation, which disrupts hydrogen bonds Denaturation of Proteins
  • 6. A protein will lose its biological activity if it loses its three-dimensional shape. Denaturation of Proteins
  • 7. © 2011 Pearson Education, Inc.Chapter 9 7 Denaturation of Proteins
  • 8. ∗ At Very High or Low pH. ∗ At Very High Temperatures. ∗ By Heavy Metal Ions. ∗ By Small Polar Molecules. When and How are Proteins Denatured?
  • 9. ∗ Affects Ionic Bonds. ∗ A High (>9) or Low pH (<3) will neutralise the charge on one of the ionically bonded ions. ∗ Hence the ionic bond is broken. Denaturation at HIGH or LOW pH
  • 10. ∗ As the temperature increases the energy of the protein increases. ∗ As the energy increases bonds are broken in the following order: Denaturation at High Temperatures • Van der Waal’sVan der Waal’s • Hydrogen BondsHydrogen Bonds • Ionic BondsIonic Bonds
  • 11. ∗ Certain metal ions will disrupt the Van der Waals’ forces in proteins. ∗ Heavy Metal Ions, such as Ag+ and Hg2+ , also inhibit enzyme activity. ∗ They do so by reducing the SH groups in cysteine. Denaturation by Metal Ions PLEASE NOTE: Spelling mistake on pictures: --- The S-S bond is a DISULPHIDE bond.
  • 12. ∗ Urea ( CO(NH2)2 ) in concentrated solution will denature proteins. ∗ It disrupts the Hydrogen Bonds. ∗ This causes complete denaturation. Denaturation by Small Polar Molecules
  • 13. Denaturation at the Quaternary Level - Dissociation of the subunits - Dissociation is usually accomplish by disrupting ionic interaction between certain groups - Urea, guanidine hydrochloride or dodecyl sulfate (detergent)
  • 14. Denaturation at the Tertiary Level - Heat and ultraviolet radiation - Extremes of pH (acidic and basic reagents) - Ions of heavy metals (e.g. Hg2+ , Ag+ , Pb2+ ) forms mercaptides with thiol groups - Organic solvents or non-polar additives (e.g. ethyl alcohol, formaldehyde and rubbing alcohol)
  • 15. Denaturation at the Tertiary Level - Urea and guanidinium chloride - Amphipaths can destabilize polar and non- polar interactions - Polyethylene glycol – can destabilize hydrogen bonds - Performic acid – can cause oxidation of disulfide bonds - Mercaptoethanol –can cause disruption of disulfide bonds
  • 16. Denaturation of the Secondary Level High temperature - will increase the vibration of atoms along hydrogen bonds
  • 17. Denaturation at the Primary Level - Hydrolysis - Enzymes (peptidases) - Cyanogen bromide, N- bromosuccinimide
  • 18. Why is Denaturation Sudden? Concentration of denaturant or temperature 100% 0% NativeStructure Critical value COOPERATIVE PROCESS Partly denatured structure is weaker so begins to change faster
  • 19. ∗ Some denaturation is reversible ∗ Urea (6M) then add to H2O ∗ Some is irreversible ∗ Hard boiling an egg Denaturation
  • 21. Unfolding and Renaturation (refolding) Anfinsen’s Experiment: Spontaneous folding of denatured ribonuclease The first proof for “sequence determines structure”
  • 22. ∗ Curling straight hair or straightening curly hair requires protein denaturation. ∗ Both processes require disruption of disulfide bonds found in the hair protein keratin. ∗ The disruption of disulfide bonds reshapes the hair and forces the reformation of disulfide bonds in new places. . Cont..
  • 23. Ammonium thioglycolate, which reduces (breaks) disulfide bonds, and hydrogen peroxide (reforms disulfide bonds) are two chemical agents used in hairstyling. 23 Denaturation of Proteins
  • 24. ∗ The process of denaturation is used as an antidote for lead or mercury poisoning. ∗ Egg whites can be given to an individual who has ingested a heavy metal. Egg whites are denaturated by the heavy metals and a precipitate is formed. ∗ Vomiting is induced to eliminate the metal-protein precipitate. Denaturation of Proteins
  • 25. Behavior of Denatured Protein Hydrophobic core Hydrophilic surface NATIVE AGGREGATED or other ingredient interactions DENATURED Unfolding forces som hydrophobic AA to surface Fast under non-physiological conditions Slow under physiological conditions
  • 26. ∗ Loss of enzymatic activity (death)/ Loss of biological activity ∗ Destruction of toxins ∗ Improved digestibility ∗ Loss of solubility ∗ Changes in texture ∗ Altered water binding capacity ∗ Increased intrinsic viscosity ∗ Inability to crystallize Consequences of Denaturation
  • 27. ∗ reduce the protein to a simple polypeptide chain ∗ slow freezing and variability of storage conditions, cause this denaturation. ∗ A denatured protein has not only lost its ability to function as an enzyme, but also its "water-holding“ ability. ∗ This results in denatured fish flesh dripping excessively when thawed (a situation known as "drip-thaw"), and appearing white, dull and spongy, and upon chewing becoming fibrous and tasteless. Protein Denaturation - chemical change during fish autolysis
  • 28. ∗ The conversion of a biologically functional molecule into a non-functional form ∗ There are many denatured states but one native state ∗ Proteins can regenerate to their native state but slowly ∗ Denatured proteins have a greater tendency to aggregate. Denaturation