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Seed Quality Assurance

    Malavika Dadlani

     Joint Director (Res)
      IARI, New Delhi

    Indian Seed Congress 2013
A Good Seed

• Variety Performance
• Seed quality
   are the two most important criteria on
  which rests the reputation of a seed
  company
Why Quality Seed

• Seed is the basic input for
  higher productivity (15 -
  20%)
• Seed is the natural delivery
  system for enhancing
  productivity, profitability and
  resource use efficiency
• Improves income,
  employment and livelihood
Seed Quality

                    Genetic Purity


                    Physical Purity

                    Germination

                    High seed vigour


                    Good seed health




               -Dr. M.S. Swaminathan
Seed quality assurance
“Seed quality assurance" implies that
 agencies charged with maintenance of
  seed quality cooperate with and support
  other areas of seed industry stakeholders
  to assure quality products to the end
  users. (M Larinde, FAO)
Rationale
• Ensure that the best quality seeds are
  produced and sold to farmers
• Prevent the spread of weed, pests and
  diseases
• Meet consumer demands for specified
  qualities (and traits)
• Cater to the needs of specialized farming,
  including mechanization
• Provide basis for healthy competition
  among seed traders
Steps in QA
• Pre-production Variety maintenance
• Production of quality seed
• Processing to obtain quality seed
• Precision in post-production testing of
  seed quality
• Seed quality enhancement
• Packaging and storage to retain seed
  quality
Precision in testing
Q2 Analyser




   http://www.astec-global.com/seed-analyser




Works on dry seeds and a
non-destructive method. But
needs to modify the design
To suit large no. of samlpes
Seed Germination & Seed Viability

• TZ introduced by ISTA during 1960s
• Though labour and time intensive for
  seed preparation & evaluation, still a
  valuable test for the industry
  As per ISTA, if 5 or > 5% seeds are FU,
  TZ test is a must

TZ test is simple and anyone can do it!
Variation in staining patterns
Genetic and Trait Purity

• It is an important tool for variety
  maintenance as well as genetically pure
  commercial seed production,both in case
  of an OPV or hybrid variety.
• Can be performed at different levels:
  based on field grow-out, lab tests,
  molecular tests etc.
Image Analysis for Variety
     Identification
Fingerprints and DNA fingerprints

Fingerprints are
unique to each
individual


                                    DNA fingerprints are unique
                                    to each individual
                                    The probability of two
                                    unrelated individuals having
                                    identical DNA fingerprints is
                                    much lower than that of their
                                    fingerprints
        Sir Alec Jeffreys, Nature, 1984
DNA fingerprinting technology
             - Humans Vs Plant varieties
              Human                               Cultivars
•   One species, races???         •   Multitude of species, subsp, races
•   Similarity in requirements    •   Diverse requirements
•   All out breeding              •   Veg. propagation to crossbred
•   One individual, one profile   •   Diverse genetic composition:
                                      purelines, inbreds, O/P, hybrids,
                                      composites, ---
                                  •   Strong to weak substructure
• Subtle substructure, varied
                                  •   Common alleles across groups
• Allelic specificity in races
                                  •   Applications: identity, purity,
• Applications: identity,
                                      relatedness, genetic makeup
  paternity
                                  •   Techniques: SSR, SNP, AFLP….?
• Techniques: SSR, SNP
Status of science                   VNTR-RFLP


•    Which technique to use!
•    Accessibility of technology
                                   RAPD
•    Applicability
•    Robustness
•    Repeatability
•    Ambiguities in profiles
                                   ISSR
•    Cost
•    Sample throughput                    Sequence/SNP

•    Automation ------
    RAPD                     SSR




                                            VNTR
STMS markers for hybrid seed purity testing in cotton




                                          Rana et al…..
Testing Hybridity in Cotton Hybrid




              M     H   F
Cost considerations in purity testing
• Present automated STMS profiling systems
  cost ~Rs. 40 /sample/marker
• For 5000 plants – cost is Rs. 2.50 lakhs, but
  can be reduced by 1/10th with judicious
  bulking procedures.
• Precision & sensitivity is high
• Time scale: 900 plants, 6 days/5000 plants
• No. of persons: 2
Seed Enhancement


“Any post harvest treatment that improves
 germination / seedling emergence or facilitate
 the development of more number of normal,
 rapid, uniform and healthy seedlings in the
 field conditions.”
                          McDonald (2000)
„Priming of an Idea-Invigoration of Seed‟
Heydecker (1973)
• Prof. Heydecker’s pioneering work on
  vegetable seed priming (at Nottingham
  University) paved the way for an array of
  technologies based on the basic principle
  of metabolic advancement of seeds for
  enhancing its performance on subsequent
  sowing, either immediately or after a
  period of storage, and under optimal or
  sub-optimal conditions of growing.
Seed Enhancement Technique
Magnetic seed treatment
Guoys balance
                                       Sample holder

Gauss meter +                           Pole pieces
controller
                                        MF probe


 Power pack




 Indigenously fabricated generator for seed
treatment (IARI, 2010)
Yield and growth attributes of maize seed
    exposed to electro-magnetic field

                      Treatment   Plant     Days       Cob        Grain
                                  height   to 50%     weight      yield
            Control                (cm)    silking   (kg/plot)   kg/plot

                                   Treated
                      Control      155       48        8.7        6.3
                       Control

                      100 mT       166       58        9.3        6.8


   200 mT             200 mT       162       62       10.5        7.6


                      Magnetic treatment with 200
                      mT for 1 hr showed 16%
                      increase in grain yield than
                      control
What needs to be done
Variety Maintenance
• Follow strictly the well defined system of
  variety purification and maintenance: an
  essential component between the variety
  release and seed production
• Identify newer areas for quality seed
  production: compact area, seed zone
  concept
• In case of licensing insist on replacement
  of Breeder seed / Source seed after every
  2 – 3 years in case of CP/ SP spp.
Quality standards
• Developing quality evaluation protocols,
  which are more precise and cost effective
• Revision of protocols and standards
  tomeet the needs of emerging
  technologies
• Generation of data to rationalise standards
• Generation of database to apply DNAFP
  for purity testing
• Generation of database for disease
  management
Relook into
       Seed Certification Standards

1. Rationalise quality
 standards
                              Legal norms to qualify
2. Develop seed quality
 standards for               • Genetic identity
                             • Physical purity
• Horticultural spp. (seed
                             • Germinability
  and planting materials)
                             • Freedom from seed-
• Organic seeds                borne pathogens
• Transgenic seeds
Capacity Building
• For seed production through contract
  farmers : regional agricultural universities
  and other institutions can build farmers’
  skill and employment.
• Training farmers to upgrade quality of
  farm-saved seed which still contributes
  ~70% of all seed used
HRD and infrastructure development

• To have Seed Testing Labs adequately
  equipped with facilities and trained
  personnel aware of latest technologies
• Establishment of Regional Referral Labs
• Close collaborations of ISTA
• Regular training programmes for seed
  analysts ( Specialised Diploma courses )
Thank you for your kind attention!

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Seed Quality Assurance and Testing Techniques Under 40 Characters

  • 1. Seed Quality Assurance Malavika Dadlani Joint Director (Res) IARI, New Delhi Indian Seed Congress 2013
  • 2. A Good Seed • Variety Performance • Seed quality are the two most important criteria on which rests the reputation of a seed company
  • 3. Why Quality Seed • Seed is the basic input for higher productivity (15 - 20%) • Seed is the natural delivery system for enhancing productivity, profitability and resource use efficiency • Improves income, employment and livelihood
  • 4. Seed Quality Genetic Purity Physical Purity Germination High seed vigour Good seed health -Dr. M.S. Swaminathan
  • 5. Seed quality assurance “Seed quality assurance" implies that agencies charged with maintenance of seed quality cooperate with and support other areas of seed industry stakeholders to assure quality products to the end users. (M Larinde, FAO)
  • 6. Rationale • Ensure that the best quality seeds are produced and sold to farmers • Prevent the spread of weed, pests and diseases • Meet consumer demands for specified qualities (and traits) • Cater to the needs of specialized farming, including mechanization • Provide basis for healthy competition among seed traders
  • 7. Steps in QA • Pre-production Variety maintenance • Production of quality seed • Processing to obtain quality seed • Precision in post-production testing of seed quality • Seed quality enhancement • Packaging and storage to retain seed quality
  • 9. Q2 Analyser http://www.astec-global.com/seed-analyser Works on dry seeds and a non-destructive method. But needs to modify the design To suit large no. of samlpes
  • 10. Seed Germination & Seed Viability • TZ introduced by ISTA during 1960s • Though labour and time intensive for seed preparation & evaluation, still a valuable test for the industry As per ISTA, if 5 or > 5% seeds are FU, TZ test is a must TZ test is simple and anyone can do it!
  • 12. Genetic and Trait Purity • It is an important tool for variety maintenance as well as genetically pure commercial seed production,both in case of an OPV or hybrid variety. • Can be performed at different levels: based on field grow-out, lab tests, molecular tests etc.
  • 13. Image Analysis for Variety Identification
  • 14. Fingerprints and DNA fingerprints Fingerprints are unique to each individual DNA fingerprints are unique to each individual The probability of two unrelated individuals having identical DNA fingerprints is much lower than that of their fingerprints Sir Alec Jeffreys, Nature, 1984
  • 15. DNA fingerprinting technology - Humans Vs Plant varieties Human Cultivars • One species, races??? • Multitude of species, subsp, races • Similarity in requirements • Diverse requirements • All out breeding • Veg. propagation to crossbred • One individual, one profile • Diverse genetic composition: purelines, inbreds, O/P, hybrids, composites, --- • Strong to weak substructure • Subtle substructure, varied • Common alleles across groups • Allelic specificity in races • Applications: identity, purity, • Applications: identity, relatedness, genetic makeup paternity • Techniques: SSR, SNP, AFLP….? • Techniques: SSR, SNP
  • 16. Status of science VNTR-RFLP • Which technique to use! • Accessibility of technology RAPD • Applicability • Robustness • Repeatability • Ambiguities in profiles ISSR • Cost • Sample throughput Sequence/SNP • Automation ------ RAPD SSR VNTR
  • 17. STMS markers for hybrid seed purity testing in cotton Rana et al…..
  • 18. Testing Hybridity in Cotton Hybrid M H F
  • 19. Cost considerations in purity testing • Present automated STMS profiling systems cost ~Rs. 40 /sample/marker • For 5000 plants – cost is Rs. 2.50 lakhs, but can be reduced by 1/10th with judicious bulking procedures. • Precision & sensitivity is high • Time scale: 900 plants, 6 days/5000 plants • No. of persons: 2
  • 20. Seed Enhancement “Any post harvest treatment that improves germination / seedling emergence or facilitate the development of more number of normal, rapid, uniform and healthy seedlings in the field conditions.” McDonald (2000)
  • 21. „Priming of an Idea-Invigoration of Seed‟ Heydecker (1973) • Prof. Heydecker’s pioneering work on vegetable seed priming (at Nottingham University) paved the way for an array of technologies based on the basic principle of metabolic advancement of seeds for enhancing its performance on subsequent sowing, either immediately or after a period of storage, and under optimal or sub-optimal conditions of growing.
  • 23. Magnetic seed treatment Guoys balance Sample holder Gauss meter + Pole pieces controller MF probe Power pack Indigenously fabricated generator for seed treatment (IARI, 2010)
  • 24. Yield and growth attributes of maize seed exposed to electro-magnetic field Treatment Plant Days Cob Grain height to 50% weight yield Control (cm) silking (kg/plot) kg/plot Treated Control 155 48 8.7 6.3 Control 100 mT 166 58 9.3 6.8 200 mT 200 mT 162 62 10.5 7.6 Magnetic treatment with 200 mT for 1 hr showed 16% increase in grain yield than control
  • 25. What needs to be done
  • 26. Variety Maintenance • Follow strictly the well defined system of variety purification and maintenance: an essential component between the variety release and seed production • Identify newer areas for quality seed production: compact area, seed zone concept • In case of licensing insist on replacement of Breeder seed / Source seed after every 2 – 3 years in case of CP/ SP spp.
  • 27. Quality standards • Developing quality evaluation protocols, which are more precise and cost effective • Revision of protocols and standards tomeet the needs of emerging technologies • Generation of data to rationalise standards • Generation of database to apply DNAFP for purity testing • Generation of database for disease management
  • 28. Relook into Seed Certification Standards 1. Rationalise quality standards Legal norms to qualify 2. Develop seed quality standards for • Genetic identity • Physical purity • Horticultural spp. (seed • Germinability and planting materials) • Freedom from seed- • Organic seeds borne pathogens • Transgenic seeds
  • 29. Capacity Building • For seed production through contract farmers : regional agricultural universities and other institutions can build farmers’ skill and employment. • Training farmers to upgrade quality of farm-saved seed which still contributes ~70% of all seed used
  • 30. HRD and infrastructure development • To have Seed Testing Labs adequately equipped with facilities and trained personnel aware of latest technologies • Establishment of Regional Referral Labs • Close collaborations of ISTA • Regular training programmes for seed analysts ( Specialised Diploma courses )
  • 31. Thank you for your kind attention!